View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20954_low_38 (Length: 413)
Name: NF20954_low_38
Description: NF20954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20954_low_38 |
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Alignment Details
Target: chr5 (Bit Score: 294; Significance: 1e-165; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 10 - 351
Target Start/End: Original strand, 6732162 - 6732503
Alignment:
| Q |
10 |
tgagctggataagacaaacagttcttgaaagtagacttcttgctttttcttccaagatctgtgagctctcctgtgatacactctactatttctgtatctt |
109 |
Q |
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| T |
6732162 |
tgagctggacaagacaaacaattcttgaaagtaggcttcttgctttttcttacaagatctgtgagctctcctgtgatagtctctactatttctgtatctt |
6732261 |
T |
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| Q |
110 |
cacttggtcgacccaacgaatcgttgcaaattattatctcttcaaccagaggagccaaagcattgcaagtttttctgcctctttcgagagtggaagggta |
209 |
Q |
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| T |
6732262 |
cacttggtcgacccaacgaatcgttgcaaacaattatctcttcaaccagaggagccaaagcattgcaagtttttctgcctctttcgagagtggaagggta |
6732361 |
T |
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| Q |
210 |
ctttcgacctctgttgaatgcttcaattgggtatttcagagcctctcccaccacagctccaacaacagctccacccactagctcagccataactatgcaa |
309 |
Q |
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| T |
6732362 |
ctttcgacctctgttgaatgcttcaattgggtatttcagagcctctcccaccacagctccaacgacagctccacccactagatcacccataactgtgcaa |
6732461 |
T |
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| Q |
310 |
gtaataatgtgttttgttgtttttgtggaatcaaacaaatgt |
351 |
Q |
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| T |
6732462 |
gtaataatgtgttttgttgtttttgtggaatcaaacaaatgt |
6732503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 334 - 399
Target Start/End: Original strand, 6763494 - 6763558
Alignment:
| Q |
334 |
gtggaatcaaacaaatgttttctagcattggatgagaaagaaaactcatgaactcaagttatttat |
399 |
Q |
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| T |
6763494 |
gtggaatcaaacaaatgttttctagcattggatgag-aagaaaacacatgaactcaagttatttat |
6763558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 202
Target Start/End: Original strand, 6725774 - 6725870
Alignment:
| Q |
106 |
tcttcacttggtcgacccaacgaatcgttgcaaattattatctcttcaaccagaggagccaaagcattgcaagtttttctgcctctttcgagagtgg |
202 |
Q |
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| T |
6725774 |
tcttctcttggtcgacccaacgaatagttgtaaccttttatctgttcaaccaaaggatccaaagccttggaagtttctatgctcttttcgagagtgg |
6725870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 345 - 399
Target Start/End: Original strand, 6762904 - 6762961
Alignment:
| Q |
345 |
caaatgttttcta---gcattggatgagaaagaaaactcatgaactcaagttatttat |
399 |
Q |
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| T |
6762904 |
caaatgttttctacgagcatcggatgagaaaaaaaactaatgaactcaagttatttat |
6762961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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