View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20954_low_42 (Length: 383)
Name: NF20954_low_42
Description: NF20954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20954_low_42 |
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| [»] chr6 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 383
Target Start/End: Original strand, 4191825 - 4192207
Alignment:
| Q |
1 |
tgtgactttccgttgtgatttctggtattttctcttcgcatctgatattgcattagcttctgagattataactcgtcattggccagagtgttaatatttg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
4191825 |
tgtgactttccgttgtgatttctggtattttctcttcgcatctgatattgcattagcttctgagattataactcgtccttggccagagtgttaatatttg |
4191924 |
T |
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| Q |
101 |
aattttaactaaacttgtttttattagagctccagaagggattgttctatatttcaaaacatgaccaaggctctgaaacaaaactttcttaattttagac |
200 |
Q |
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| T |
4191925 |
aattttaactaaacttgtttttattagagctccagaagggattgttctatatttcaaaacatgactaaggctctgaaacaaaactttcttaattttagac |
4192024 |
T |
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| Q |
201 |
agcatgcttattcgcatattcattgtactgctgctctctgatttctgtttaactgataagatcttcatctgattgtgttttatgtattcgctccagtctt |
300 |
Q |
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| T |
4192025 |
agcatgcttattcgcatattcattgtactgctgctctctgatttctgtttaactgataagatcttcatctgattgtgttttatgtattctctccagtctt |
4192124 |
T |
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| Q |
301 |
tccattactgcaagtatagatgggatgaaaaccaactctacatatttgctgatgattgtgttccaagatggcttcctgcatca |
383 |
Q |
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| T |
4192125 |
tccattactgcaagtatagatgggatgaaaaccaactctacatatttgctgatgattgtgttccaagatggcttactgcatca |
4192207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 383
Target Start/End: Original strand, 52211384 - 52211766
Alignment:
| Q |
1 |
tgtgactttccgttgtgatttctggtattttctcttcgcatctgatattgcattagcttctgagattataactcgtcattggccagagtgttaatatttg |
100 |
Q |
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| T |
52211384 |
tgtgactttccgttgtgatttctggtattttctcttcgcatctgatattgcattagcttctgatattataactcgtctttggccagagtgttaatatttg |
52211483 |
T |
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| Q |
101 |
aattttaactaaacttgtttttattagagctccagaagggattgttctatatttcaaaacatgaccaaggctctgaaacaaaactttcttaattttagac |
200 |
Q |
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| T |
52211484 |
aattttaactaaacttgtttttattagagctccagaagggattgttctatatttcaaaacatgactaaggctctgaaacaaaactttcttaattttagac |
52211583 |
T |
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| Q |
201 |
agcatgcttattcgcatattcattgtactgctgctctctgatttctgtttaactgataagatcttcatctgattgtgttttatgtattcgctccagtctt |
300 |
Q |
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| T |
52211584 |
agcatgcttattcgcatattcattgtactgctgctctctgatttctgtttaactgataagatcttcatctgattgtgttttctgtattctctccagtctt |
52211683 |
T |
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| Q |
301 |
tccattactgcaagtatagatgggatgaaaaccaactctacatatttgctgatgattgtgttccaagatggcttcctgcatca |
383 |
Q |
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| T |
52211684 |
tccattactgcaagtatagacgggatgaaaatcaactctacatatttgctgatgattgtgttccaagatggcttactgcatca |
52211766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 283 - 374
Target Start/End: Complemental strand, 47715685 - 47715594
Alignment:
| Q |
283 |
tgtattcgctccagtctttccattactgcaagtatagatgggatgaaaaccaactctacatatttgctgatgattgtgttccaagatggctt |
374 |
Q |
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| T |
47715685 |
tgtattctctccagtctttccattactgcaagtatagacgggatgaaaaccagctttacatatttgctgatgattctgttccaagatggctt |
47715594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 233 - 383
Target Start/End: Original strand, 47858535 - 47858685
Alignment:
| Q |
233 |
gctctctgatttctgtttaactga-taagatcttcatctgattgtgttttatgtattcgctccagtctttccattactgcaagtatagatgggatgaaaa |
331 |
Q |
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| T |
47858535 |
gctctccgatttctgtttcactaaataaaatctttagctaattgtgttttgtgtgttctttc-agtctttccattactgcaagtatagacgggatgaaaa |
47858633 |
T |
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| Q |
332 |
ccaactctacatatttgctgatgattgtgttccaagatggcttcctgcatca |
383 |
Q |
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| T |
47858634 |
ccaactttacatatttgctgatgattccgttccaagatggcttactgcatca |
47858685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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