View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20954_low_45 (Length: 371)
Name: NF20954_low_45
Description: NF20954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20954_low_45 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 8 - 370
Target Start/End: Complemental strand, 55123211 - 55122849
Alignment:
| Q |
8 |
tccaatctggttgtcagaaggcccagcatcaactaaagattcagtcggatgattgaaatccaccctattaacatcaccaagagagctacagttttgagga |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55123211 |
tccaatctggttgtcagaaggcccagcatcaactaaagattcagtcggatgattgaaatccaccctattaacatcaccaagagagctacagttttgagga |
55123112 |
T |
|
| Q |
108 |
tcaatcttgtccatgaagttgcatccttcagatgaaagcttgttaccataaggatcagactgaccaacctgttcagattgcatggattcaggttgtttag |
207 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55123111 |
tcaatcttgtccatgaacttgcatccttcagatgaaagcttgttaccataaggatcagactgaccaacctgttcagattgcatggattcaggttgtttag |
55123012 |
T |
|
| Q |
208 |
tctcaactgcttgatttggtatcatttccagaatattagcaatgccagtacttggatttccatttgagtttggggtattataaacattgctcaaagtatc |
307 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55123011 |
tctcaactgcttgattcggtaccatttccagaatattagcaatgccagtacttggatttccatttgagtttggggtattataaacattgctcaaagtatc |
55122912 |
T |
|
| Q |
308 |
aatagaaccaagagttgtctttaaatcttcttgtacatttgtttctgctaagttctgcttctc |
370 |
Q |
| |
|
||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55122911 |
aatagaaacaagagttgtatttgaatcttcttgtacatttgtttctgctaagttctgcttctc |
55122849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University