View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20954_low_46 (Length: 369)
Name: NF20954_low_46
Description: NF20954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20954_low_46 |
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Alignment Details
Target: chr7 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 18 - 351
Target Start/End: Original strand, 49041873 - 49042206
Alignment:
| Q |
18 |
gtaatggttcacaatcattgcagaaagtgaaggagttgggttaaacaaactacaatttacaacaagaatgtcaatgtctcttggattaacacatgtttta |
117 |
Q |
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| T |
49041873 |
gtaatggttcacaatcattgcagaaagtgaaggagttgggttaaacaaactacaatttacaacaagaatgtcaatgtctcttggattaacacctgtttta |
49041972 |
T |
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| Q |
118 |
gcaaaaagtgcgtctaatgctccaaacattacagcttcggcttctaaacgcgcttctttcatgcatagatttggtggacttgacattattccgtttggca |
217 |
Q |
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| T |
49041973 |
gcaaaaagtgcgtctaatgatccaaacattacagattcggcttctaaacgcgcttctttcatgcatagatttggtggacttgacattattccgtttggca |
49042072 |
T |
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| Q |
218 |
aggaagtttcatcaccaagacctgctcttgacaaaatgcggcgttgaaattgaagtgtttcttctccgaattcgccactatcttctaacattttaacgaa |
317 |
Q |
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| T |
49042073 |
aggaagtttcatcaccaagacctgctcttgacaaaatgcggcgttgaaattgaagtgtttcttctccgaattcgccactatcttctaacattttaacgaa |
49042172 |
T |
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| Q |
318 |
agaatcaactgcaattttccgctcattctcaggt |
351 |
Q |
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| T |
49042173 |
agattcaactgcaattttccgctcattctcaggt |
49042206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 21 - 114
Target Start/End: Complemental strand, 26463917 - 26463824
Alignment:
| Q |
21 |
atggttcacaatcattgcagaaagtgaaggagttgggttaaacaaactacaatttacaacaagaatgtcaatgtctcttggattaacacatgtt |
114 |
Q |
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| T |
26463917 |
atggttcacaatcattgcagaaagggaaggagttgggttatacaaactacaatttacaacaaggatgtcaatgtctcttgaattaacacatgtt |
26463824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 15237204 - 15237143
Alignment:
| Q |
19 |
taatggttcacaatcattgcagaaagtgaaggagttgggttaaacaaactacaatttacaac |
80 |
Q |
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| T |
15237204 |
taatgattcacaatcatggcagaaagagatggtgttggattaaacaaactacaattcacaac |
15237143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 34052033 - 34051972
Alignment:
| Q |
19 |
taatggttcacaatcattgcagaaagtgaaggagttgggttaaacaaactacaatttacaac |
80 |
Q |
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| T |
34052033 |
taatgattcacaatcatagcagaaagagaaggtgtaggattaaacaaactacaattcacaac |
34051972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 28 - 83
Target Start/End: Complemental strand, 26452806 - 26452751
Alignment:
| Q |
28 |
acaatcattgcagaaagtgaaggagttgggttaaacaaactacaatttacaacaag |
83 |
Q |
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| T |
26452806 |
acaatcatagctgaaagtgatggcgttggattaaacaaactacaattaacaacaag |
26452751 |
T |
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