View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20954_low_5 (Length: 739)

Name: NF20954_low_5
Description: NF20954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20954_low_5
NF20954_low_5
[»] chr8 (5 HSPs)
chr8 (343-733)||(1845514-1845904)
chr8 (270-347)||(15196499-15196576)
chr8 (270-306)||(24802595-24802631)
chr8 (30-128)||(31219562-31219659)
chr8 (314-347)||(38125627-38125660)
[»] chr2 (4 HSPs)
chr2 (343-732)||(29818467-29818856)
chr2 (1-306)||(19477214-19477520)
chr2 (270-347)||(12457017-12457094)
chr2 (271-339)||(9154142-9154210)
[»] chr5 (1 HSPs)
chr5 (1-104)||(39003122-39003225)
[»] chr3 (1 HSPs)
chr3 (30-137)||(54425647-54425754)
[»] chr1 (2 HSPs)
chr1 (31-137)||(44911977-44912082)
chr1 (271-306)||(31922881-31922916)
[»] chr7 (4 HSPs)
chr7 (270-339)||(31448371-31448440)
chr7 (271-343)||(10248806-10248878)
chr7 (271-346)||(28885482-28885557)
chr7 (270-348)||(1287115-1287193)
[»] chr4 (3 HSPs)
chr4 (269-346)||(32564829-32564906)
chr4 (269-348)||(7209056-7209135)
chr4 (314-347)||(32564872-32564905)
[»] chr6 (1 HSPs)
chr6 (33-109)||(32752880-32752956)


Alignment Details
Target: chr8 (Bit Score: 371; Significance: 0; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 343 - 733
Target Start/End: Original strand, 1845514 - 1845904
Alignment:
Q  343 agtattacatttgacagaatcacgtgaccgtgattgtgccaaactcaccgtcaattcaagcaggtgcagaaatcacttttggcctttcttcttccataaa 442  Q
    |||||||| |||||||||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1845514 agtattacttttgacagaatcacgtgaccgtgattttgccaaactctctgtcaattcaagcaggtgcagaaatcacttttggcctttcttcttccataaa 1845613  T
Q  443 tcaccaaacattctaataccagaagaacccttcttttttccactaccaaaaccatcatccagatcatcagccataccaggagaacctacatatccatgat 542  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  1845614 tcaccaaacattctaataccagaagaacccttcttttttccactaccaaaaccatcatccagatcatcaaccataccaggagaacctacatatccatgat 1845713  T
Q  543 accttccaccaggtgtctcaaatgttccaccaccaaagtgcttatccattgaaccacacctttcaggaaccctagcagcagcactcatatcaaaacctcc 642  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1845714 accttccaccaggtgtctcaaatgttccaccaccaaagtgcttatccattgaaccacacctttcaggaaccctagcagcagcactcatatcaaaacctcc 1845813  T
Q  643 tgcaagcactgcagctgcagcatctgctgcttttctccattgttctgtctgcacccttagcttcttcatttctgattctaacccggccttt 733  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1845814 tgcaagcactgcagctgcagcatctgctgcttttctccattgttctgtctgcacccttagcttcttcatttctgattctaacccggccttt 1845904  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 270 - 347
Target Start/End: Complemental strand, 15196576 - 15196499
Alignment:
Q  270 atactctctccgtccctatatctaagcacccttttatctcacataaagggtgcttacatatggggacggagggagtat 347  Q
    |||||| ||||||||||||||||||||||||||||||   |   ||| | ||||||||||| ||||||||||||||||    
T  15196576 atactccctccgtccctatatctaagcacccttttattagaagaaaaagatgcttacatatagggacggagggagtat 15196499  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 270 - 306
Target Start/End: Complemental strand, 24802631 - 24802595
Alignment:
Q  270 atactctctccgtccctatatctaagcacccttttat 306  Q
    ||||||| |||||||||||||||||||||||||||||    
T  24802631 atactctatccgtccctatatctaagcacccttttat 24802595  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 30 - 128
Target Start/End: Original strand, 31219562 - 31219659
Alignment:
Q  30 gagattgtttagaataatttgacaactgagttaatttaaatcgtactatctataattaacaactaagatgcaaaacaacgacaaaacaacgtgcttttt 128  Q
    ||||||||||||||| |||| | |||||||||||||||||  ||   ||||| |||||||  || ||||||||| || |||||||||| | ||||||||    
T  31219562 gagattgtttagaatgattttataactgagttaatttaaactgtttgatcta-aattaacggctgagatgcaaatcagcgacaaaacatcatgcttttt 31219659  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 314 - 347
Target Start/End: Original strand, 38125627 - 38125660
Alignment:
Q  314 aaagggtgcttacatatggggacggagggagtat 347  Q
    ||||||||||||||||| ||||||||||||||||    
T  38125627 aaagggtgcttacatatagggacggagggagtat 38125660  T

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Target: chr2 (Bit Score: 358; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 343 - 732
Target Start/End: Complemental strand, 29818856 - 29818467
Alignment:
Q  343 agtattacatttgacagaatcacgtgaccgtgattgtgccaaactcaccgtcaattcaagcaggtgcagaaatcacttttggcctttcttcttccataaa 442  Q
    |||||||| |||||||||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  29818856 agtattacttttgacagaatcacgtgaccgtgattctgccaaactcgctgtcaattcaagcaggtgcagaaatcacttttgacctttcttcttccataaa 29818757  T
Q  443 tcaccaaacattctaataccagaagaacccttcttttttccactaccaaaaccatcatccagatcatcagccataccaggagaacctacatatccatgat 542  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  29818756 tcaccaaacattctaataccagaagaacccttcttttttccactaccaaaaccatcatccagatcatcaaccataccaggagaacctacatatccatgat 29818657  T
Q  543 accttccaccaggtgtctcaaatgttccaccaccaaagtgcttatccattgaaccacacctttcaggaaccctagcagcagcactcatatcaaaacctcc 642  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29818656 accttccaccaggtgtctcaaatgttccaccaacaaagtgcttatccattgaaccacacctttcaggaaccctagcagcagcactcatatcaaaacctcc 29818557  T
Q  643 tgcaagcactgcagctgcagcatctgctgcttttctccattgttctgtctgcacccttagcttcttcatttctgattctaacccggcctt 732  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  29818556 tgcaagcactgcagctgcagcatctgctgcttttctccattgttctgtctgcacccttagcttcttcatttctgattctaaccctgcctt 29818467  T

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Target: chr2; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 19477520 - 19477214
Alignment:
Q  1 caggaccttccgatctaaatcatgcaattgagattgtttagaataatttgacaactgagttaatttaaatcgtactatctataattaacaactaagatgc 100  Q
    ||||||| ||||||||||||| ||  || || ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||  | ||||||    
T  19477520 caggaccgtccgatctaaatcttgtgatcgaaattgtttagaataatttgacaactgagttaatttaaatcatacgatctataattaacagttgagatgc 19477421  T
Q  101 aaaacaacgacaaaacaacgtgctttttgacagcagg-aaactcagtcctccaatttcattaccaaagttccattcaatgtgtagtgtacttcaatgtgt 199  Q
    ||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  19477420 aaaacaacggcaaaacaacgtgctttttgacggcagggaaactcagtcctccaatttcattcccaaagtaccattcaatgtgtagtgtacttcaatgtgt 19477321  T
Q  200 gtcccactttcatcacattaatttttcaaataatagtctagttgatatcacatacattgaatgcgataagatactctctccgtccctatatctaagcacc 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  19477320 gtcccactttcatcacattaatttttcaaataatagtctagttgagatcacatacattgaatgcgataagatactccatccgtccctatatctaagcacc 19477221  T
Q  300 cttttat 306  Q
    |||||||    
T  19477220 cttttat 19477214  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 270 - 347
Target Start/End: Original strand, 12457017 - 12457094
Alignment:
Q  270 atactctctccgtccctatatctaagcacccttttatctcacataaagggtgcttacatatggggacggagggagtat 347  Q
    |||||| ||||||||||||||||||||||||||||||   |   ||||||||||||||||| ||||| ||||||||||    
T  12457017 atactccctccgtccctatatctaagcacccttttattagaggcaaagggtgcttacatatagggacagagggagtat 12457094  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 271 - 339
Target Start/End: Complemental strand, 9154210 - 9154142
Alignment:
Q  271 tactctctccgtccctatatctaagcacccttttatctcacataaagggtgcttacatatggggacgga 339  Q
    ||||| ||||||||||||||||||||||||||||||   |   |||||||| |||||||| ||||||||    
T  9154210 tactccctccgtccctatatctaagcacccttttattagaggaaaagggtggttacatatagggacgga 9154142  T

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Target: chr5 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 39003122 - 39003225
Alignment:
Q  1 caggaccttccgatctaaatcatgcaattgagattgtttagaataatttgacaactgagttaatttaaatcgtactatctataattaacaactaagatgc 100  Q
    ||||||| || |||||||||| ||   ||||||||||||||||| |||||| ||||||||||||||||||  ||  ||||||||||||| ||| |||||     
T  39003122 caggaccgtctgatctaaatcgtgtggttgagattgtttagaatgatttgataactgagttaatttaaattatatgatctataattaacgactgagatga 39003221  T
Q  101 aaaa 104  Q
    ||||    
T  39003222 aaaa 39003225  T

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Target: chr3 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 137
Target Start/End: Complemental strand, 54425754 - 54425647
Alignment:
Q  30 gagattgtttagaataatttgacaactgagttaatttaaatcgtactatctataattaacaactaagatgcaaaacaacgacaaaacaacgtgctttttg 129  Q
    ||||||||||| ||||||||||||||||||||||||||||  |||  ||||| |||||||   | ||||||||||| |||  |||||| ||||||||||     
T  54425754 gagattgtttaaaataatttgacaactgagttaatttaaactgtaagatctacaattaacggttgagatgcaaaactacggtaaaacatcgtgctttttt 54425655  T
Q  130 acagcagg 137  Q
    ||| ||||    
T  54425654 acaacagg 54425647  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 31 - 137
Target Start/End: Complemental strand, 44912082 - 44911977
Alignment:
Q  31 agattgtttagaataatttgacaactgagttaatttaaatcgtactatctataattaacaactaagatgcaaaacaacgacaaaacaacgtgctttttga 130  Q
    ||||||||||||||||||| | ||||||||||||||||| |    ||||||||||||| |  | ||||||||||||| | ||||||||||||| ||||||    
T  44912082 agattgtttagaataatttta-aactgagttaatttaaaccactatatctataattaatagttgagatgcaaaacaatgccaaaacaacgtgcattttga 44911984  T
Q  131 cagcagg 137  Q
    | |||||    
T  44911983 ccgcagg 44911977  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 271 - 306
Target Start/End: Complemental strand, 31922916 - 31922881
Alignment:
Q  271 tactctctccgtccctatatctaagcacccttttat 306  Q
    ||||||||||||||||||||||||||||||||||||    
T  31922916 tactctctccgtccctatatctaagcacccttttat 31922881  T

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Target: chr7 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 270 - 339
Target Start/End: Complemental strand, 31448440 - 31448371
Alignment:
Q  270 atactctctccgtccctatatctaagcacccttttatctcacataaagggtgcttacatatggggacgga 339  Q
    |||||||||||||||||||||||||||||||||||||   |   ||||||||||||||||| ||||||||    
T  31448440 atactctctccgtccctatatctaagcacccttttattagatgcaaagggtgcttacatatagggacgga 31448371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 271 - 343
Target Start/End: Complemental strand, 10248878 - 10248806
Alignment:
Q  271 tactctctccgtccctatatctaagcacccttttatctcacataaagggtgcttacatatggggacggaggga 343  Q
    ||||||||||||| ||||||||||||||||||||||   |  ||||| ||||||| |||  ||||||||||||    
T  10248878 tactctctccgtctctatatctaagcacccttttattagatgtaaagagtgcttatatagagggacggaggga 10248806  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 271 - 346
Target Start/End: Original strand, 28885482 - 28885557
Alignment:
Q  271 tactctctccgtccctatatctaagcaccctttt-atctcacataaagggtgcttacatatggggacggagggagta 346  Q
    |||||||||||||||||||| |||||||| ||||  ||| | | |||||||||||||||||  ||||||||||||||    
T  28885482 tactctctccgtccctatatgtaagcaccattttcctctaata-aaagggtgcttacatataaggacggagggagta 28885557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 270 - 348
Target Start/End: Complemental strand, 1287193 - 1287115
Alignment:
Q  270 atactctctccgtccctatatctaagcacccttttatctcacataaagggtgcttacatatggggacggagggagtatt 348  Q
    ||||||||| ||||||||||||||||||| |||||||   | | ||| ||||| |||||||  | ||||||||||||||    
T  1287193 atactctcttcgtccctatatctaagcactcttttattaaagacaaatggtgcctacatataagaacggagggagtatt 1287115  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 269 - 346
Target Start/End: Complemental strand, 32564906 - 32564829
Alignment:
Q  269 gatactctctccgtccctatatctaagcacccttttatctcacataaagggtgcttacatatggggacggagggagta 346  Q
    ||||||| |||||||||||||| |||||||||||||||   |   |||| |||||||||||| |||||||||||||||    
T  32564906 gatactccctccgtccctatatgtaagcacccttttattagaggcaaagagtgcttacatatagggacggagggagta 32564829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 269 - 348
Target Start/End: Original strand, 7209056 - 7209135
Alignment:
Q  269 gatactctctccgtccctatatctaagcacccttttatctcacataaagggtgcttacatatggggacggagggagtatt 348  Q
    ||||||| ||| ||||||||||||||||||  ||||||   | | |||| |||||||||||| |||||||||||||||||    
T  7209056 gatactccctcagtccctatatctaagcacttttttattagagacaaagagtgcttacatatagggacggagggagtatt 7209135  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 314 - 347
Target Start/End: Original strand, 32564872 - 32564905
Alignment:
Q  314 aaagggtgcttacatatggggacggagggagtat 347  Q
    ||||||||||||||||| ||||||||||||||||    
T  32564872 aaagggtgcttacatatagggacggagggagtat 32564905  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 109
Target Start/End: Original strand, 32752880 - 32752956
Alignment:
Q  33 attgtttagaataatttgacaactgagttaatttaaatcgtactatctataattaacaactaagatgcaaaacaacg 109  Q
    ||||||||||||||||| | || |||||||||||||| ||| | |||||||||||| |  ||||||| |||||||||    
T  32752880 attgtttagaataattttataattgagttaatttaaaccgttcaatctataattaatagttaagatgtaaaacaacg 32752956  T

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