View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20954_low_53 (Length: 341)
Name: NF20954_low_53
Description: NF20954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20954_low_53 |
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Alignment Details
Target: chr8 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 27 - 319
Target Start/End: Original strand, 39072996 - 39073288
Alignment:
| Q |
27 |
ggtagaattttagctaattaaagtattaaatcaataaagatacacaagatcatctaactagctagatccatcaaaattagaacctaacacttcatatttt |
126 |
Q |
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| T |
39072996 |
ggtagaattttagctaattaaagtattaaatcaataaagatacacaagatcatctaactagctagatccatcaaaattagaacctaacacttcatatttt |
39073095 |
T |
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| Q |
127 |
tcatatatataattgtttttggtcatggaaaataaccaaaataatactagtagcgcattcacaagcacttggaatcttgaaaaaatggaaacaaatgaac |
226 |
Q |
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| T |
39073096 |
tcatatatataattgtttttggtcatggaaaataaccaaaataatactagtagcgcattcacaagcacttggaatcttgaaaaaatggaaacaaatgaac |
39073195 |
T |
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| Q |
227 |
aaaaccgtattattctccaacaagatcatcatcaagttcctatgaattcttctgtaatttggccaccaaataactacaacaacatgatcatgg |
319 |
Q |
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| T |
39073196 |
aaaaccgtattattctccaacaagatcatcatcaagttcctatgaattcttctgtaatttggccacaaaataactacagcaacatgatcatgg |
39073288 |
T |
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