View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20954_low_54 (Length: 337)
Name: NF20954_low_54
Description: NF20954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20954_low_54 |
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Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 3 - 311
Target Start/End: Original strand, 32107485 - 32107794
Alignment:
| Q |
3 |
tacttgaaatgcaatgatattttcctttcaaaaagaaatgcaatgatatttctattgaaaaaaccaaaaccaagtttcgtgtatcttcctctcaaaaaag |
102 |
Q |
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| T |
32107485 |
tacttcaaatgcaatgatattttcctttcaaaaagaaatgcaatgatatttctattgaaaaaaccaaaaccaagtttcgtgtatcttcctctcaaaaaag |
32107584 |
T |
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| Q |
103 |
ataagttgcatgtgtcttaaaaataagatcttatttgagtttataaaaaatgaaatatatcaccttataaacttaatttatatggatgaattatacttaa |
202 |
Q |
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| T |
32107585 |
ataagttgcatgtgtcttgaaaataagatcttatttgattttataaagagtgatatatttcaccttataaaatagatttatatggatgaattatgctcaa |
32107684 |
T |
|
| Q |
203 |
tatatgaacctaataatttcaacacatcttaatttttgtt-ggacttctggatagccttaacattatggtcaatcatcacatttgattaagaacaatcac |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| | |||||||||||||| |||||||||||||| |
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| T |
32107685 |
tatatgaacctaataatttcaacacatcttaatttttgttgggacttctggatagctttaacattatgattaatcatcacatttggttaagaacaatcac |
32107784 |
T |
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| Q |
302 |
ataagtaagt |
311 |
Q |
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| T |
32107785 |
acaagtaagt |
32107794 |
T |
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