View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20954_low_56 (Length: 323)
Name: NF20954_low_56
Description: NF20954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20954_low_56 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 59 - 309
Target Start/End: Original strand, 47661693 - 47661934
Alignment:
| Q |
59 |
ctatagggacaatatgttttttacttgtttataactttgatttatttatattattaagttatttggattctaaatgcatgtgatggattgtcattccatg |
158 |
Q |
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| T |
47661693 |
ctatagggacaatatgttttttacttgtttataactttgatttatttatattattaagttatttggattctaaatgcatgtgatggattgtcattccatg |
47661792 |
T |
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| Q |
159 |
gatgatatgattttctgagtatagatataatctacatgagctgcaagagtccttctcatcaaacattcctctaatattctcctgatctccatggcaatcc |
258 |
Q |
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| T |
47661793 |
gatgatatgattttctgagtatagatata---------agctgcaagagtccttctcatcaaacattcctctaatattctcctgatctccatggcaatcc |
47661883 |
T |
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| Q |
259 |
tcataatccaacactgcttttgctgccaaaacatgcttggatgggaaaaac |
309 |
Q |
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| T |
47661884 |
tcataatccaacactgcttttgctgccaaaacatgcttggatgggaaaaac |
47661934 |
T |
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