View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20954_low_59 (Length: 318)
Name: NF20954_low_59
Description: NF20954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20954_low_59 |
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Alignment Details
Target: chr7 (Bit Score: 294; Significance: 1e-165; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 16693813 - 16693512
Alignment:
| Q |
1 |
agataggccacatccattaacacacaccgaggcacataaagtagggatcagtttacgctgatataaaactagataaggacatggaattttatggagtata |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16693813 |
agataggccacatccattaacacacaccgatgcacataaagtagggatcagtttacgctgatataaaactagataaggacatggaattttatggagtata |
16693714 |
T |
|
| Q |
101 |
tacttttaaaagaaattacaataatttaccattctttcagcagtggcatcccaaaactggacaagagaatcgttcaaaccaatggctaaatgacatccat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16693713 |
tacttttaaaagaaattacaataatttaccattctttcagcagtggtatcccaaaactggacaagagaatcgttcaaaccaatggctaaatgacatccat |
16693614 |
T |
|
| Q |
201 |
ctggggaccagctaacgcttgtaacaggaccatgttcctcatccacggtgacgagttctgaagcagaacaatctgaagcattccaaagataaacggtatt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16693613 |
ctggggaccagctaacgcttgtaacaggaccatgttcctcatccacggtgacgagttctgaagcagaacaatctgaagcattccaaagataaacggtatt |
16693514 |
T |
|
| Q |
301 |
tt |
302 |
Q |
| |
|
|| |
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| T |
16693513 |
tt |
16693512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 17668049 - 17667748
Alignment:
| Q |
1 |
agataggccacatccattaacacacaccgaggcacataaagtagggatcagtttacgctgatataaaactagataaggacatggaattttatggagtata |
100 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17668049 |
agataggccacatccattaacacacaccgatgcacataaagtagggatcagtttacgctgatataaaactagataaggacatggaattttatggagtata |
17667950 |
T |
|
| Q |
101 |
tacttttaaaagaaattacaataatttaccattctttcagcagtggcatcccaaaactggacaagagaatcgttcaaaccaatggctaaatgacatccat |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17667949 |
tacttttaaaagaaattacaataatttaccattctttcagcagtggtatcccaaaactggacaagagaatcgttcaaaccaatggctaaatgacatccat |
17667850 |
T |
|
| Q |
201 |
ctggggaccagctaacgcttgtaacaggaccatgttcctcatccacggtgacgagttctgaagcagaacaatctgaagcattccaaagataaacggtatt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17667849 |
ctggggaccagctaacgcttgtaacaggaccatgttcctcatccacggtgacgagttctgaagcagaacaatctgaagcattccaaagataaacggtatt |
17667750 |
T |
|
| Q |
301 |
tt |
302 |
Q |
| |
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|| |
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|
| T |
17667749 |
tt |
17667748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 139 - 302
Target Start/End: Original strand, 43527294 - 43527457
Alignment:
| Q |
139 |
agcagtggcatcccaaaactggacaagagaatcgttcaaaccaatggctaaatgacatccatctggggaccagctaacgcttgtaacaggaccatgttcc |
238 |
Q |
| |
|
|||||||| |||||| | ||||||| | || | |||||| |||||||||||||| | ||||| |||| ||||||||||||||| |||||||||| || |
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| T |
43527294 |
agcagtggtatcccagagctggacatgggagttgttcaacccaatggctaaatggcgaccatcgggggcccagctaacgcttgtgacaggaccatcatca |
43527393 |
T |
|
| Q |
239 |
tcatccacggtgacgagttctgaagcagaacaatctgaagcattccaaagataaacggtatttt |
302 |
Q |
| |
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||||| || ||||| || ||||||| || ||||||||||||||||||||||||||||||||| |
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|
| T |
43527394 |
tcatctacagtgacaagctctgaagtggaggaatctgaagcattccaaagataaacggtatttt |
43527457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 161 - 296
Target Start/End: Original strand, 13119788 - 13119923
Alignment:
| Q |
161 |
acaagagaatcgttcaaaccaatggctaaatgacatccatctggggaccagctaacgcttgtaacaggaccatgttcctcatccacggtgacgagttctg |
260 |
Q |
| |
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||||| |||| |||||| |||| ||||||||| ||||||||| | | |||| ||| |||||| ||||||||||||| |||||||| ||||| || |||| |
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| T |
13119788 |
acaagggaattgttcaacccaacggctaaatggcatccatcttgagcccagttaatgcttgtgacaggaccatgttgatcatccaccgtgacaagctctg |
13119887 |
T |
|
| Q |
261 |
aagcagaacaatctgaagcattccaaagataaacgg |
296 |
Q |
| |
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|| ||| || ||||||||||| |||||||||| |
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|
| T |
13119888 |
aactggaagtgtcagaagcattccacagataaacgg |
13119923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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