View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20954_low_6 (Length: 728)

Name: NF20954_low_6
Description: NF20954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20954_low_6
NF20954_low_6
[»] chr6 (13 HSPs)
chr6 (1-448)||(31565922-31566356)
chr6 (445-608)||(31565718-31565883)
chr6 (635-728)||(31565626-31565719)
chr6 (1-114)||(33390921-33391031)
chr6 (1-121)||(33265730-33265847)
chr6 (1-121)||(33274874-33274991)
chr6 (1-112)||(33403459-33403567)
chr6 (1-114)||(33412766-33412876)
chr6 (1-107)||(33641746-33641849)
chr6 (1-112)||(33060403-33060511)
chr6 (1-112)||(33361346-33361454)
chr6 (2-114)||(33307335-33307444)
chr6 (83-113)||(33288502-33288532)
[»] chr2 (1 HSPs)
chr2 (1-112)||(17437813-17437921)
[»] chr5 (1 HSPs)
chr5 (234-353)||(11662784-11662909)
[»] scaffold1749 (1 HSPs)
scaffold1749 (1-112)||(994-1102)
[»] scaffold0428 (1 HSPs)
scaffold0428 (1-112)||(9755-9863)
[»] chr4 (1 HSPs)
chr4 (1-50)||(31501309-31501358)


Alignment Details
Target: chr6 (Bit Score: 392; Significance: 0; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 1 - 448
Target Start/End: Complemental strand, 31566356 - 31565922
Alignment:
Q  1 attgttgcgagtgtcttcacctctgaaagtgacaaatacatcataataatagtttcttcttgaagaagttacaagagctgtagatgagttgctgctgcta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  31566356 attgttgcgagtgtcttcacctctgaaagtgacaaatacatcataataatagtttcttcttgaagaagttacaagagctgtagatgagttactgctgcta 31566257  T
Q  101 gccatctgaataagttcaattgttaaagaactatattggaatatacaaacaaaaaggaaccgactcatttagttccaacacaaacaaaaattctaaataa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31566256 gccatctgaataagttcaattgttaaagaactatattggaatatacaaacaaaaaggaaccgactcatttagttccaacacaaacaaaaattctaaataa 31566157  T
Q  201 gcaagaacagttatttgacaaaaacccattaacaaaaacacaaattcgtgaaaacctatttcaggaattaccttaagtcaatcaaattcgatgtctttat 300  Q
    ||||||||||||||||||||             ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  31566156 gcaagaacagttatttgaca-------------aaaaacacaaattcgtgaaaacctatttcaggaattatcttaagtcgatcaaattcgatgtctttat 31566070  T
Q  301 cgtcgaaaagagtggcagcaagtctttgagaaagcgctggaggaggtgagaaagtaacagaaacctcagaaagaaacagcttcagttgttgttggaattt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31566069 cgtcgaaaagagtggcagcaagtctttgagaaagcgctggaggaggtgagaaagtaacagaaacctcagaaagaaacagcttcagttgttgttggaattt 31565970  T
Q  401 atgatggttatgggttttgaggttgaagagcaaaagaaagttgataag 448  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  31565969 atgatggttatgggttttgaggttgaagagcaaaagaaagttgataag 31565922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 445 - 608
Target Start/End: Complemental strand, 31565883 - 31565718
Alignment:
Q  445 taaggggttgaggaaaagtaagggcactttcgtcatttcattcccaaagatgaagaaaaggtgccaataattgtgttattttttatacccataaattgaa 544  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  31565883 taaggggttgaggaaaagtaagggcactttcgtcatttcattcccaaagatgaagaaaaggtgccaataattgtgttattttttatatccataaattgaa 31565784  T
Q  545 acattctaccatattcatta--acactcataattggcaccttctgtaagctctttatgaatatgaa 608  Q
    ||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||||||||    
T  31565783 acattctaccatattcattaacacactcataattggcaccttttgtaagctctttatgaatatgaa 31565718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 635 - 728
Target Start/End: Complemental strand, 31565719 - 31565626
Alignment:
Q  635 aagagcttacaaaaggagccatttatccacttgcttacaatcaagctctatgaacacggaagcaaaactcatgttaccgagcaactttatcgct 728  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31565719 aagagcttacaaaaggtgccatttatccacttgcttacaatcaagctctatgaacacggaagcaaaactcatgttaccgagcaactttatcgct 31565626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 33390921 - 33391031
Alignment:
Q  1 attgttgcgagtgtcttcacctctgaaagtgacaaatacatcataataatagtttcttcttgaagaagttacaagagctgtagatgagttgctgctgcta 100  Q
    ||||||||||||||||||||||| ||| |||||||| ||||||||||||||   |||| |||||||||| |||||||||| ||||||||||||  |||||    
T  33390921 attgttgcgagtgtcttcacctcggaaggtgacaaacacatcataataata---tctttttgaagaagtcacaagagctgaagatgagttgctattgcta 33391017  T
Q  101 gccatctgaataag 114  Q
    ||||||||||||||    
T  33391018 gccatctgaataag 33391031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 33265730 - 33265847
Alignment:
Q  1 attgttgcgagtgtcttcacctctgaaagtgacaaatacatcataataatagtttcttcttgaagaagttacaagagctgtagatgagttgctgctgcta 100  Q
    |||||| ||||| |||||||||||||| ||||||||||||||||||||||   |||||||||| |||||  ||||| ||| ||||||||||||| |||||    
T  33265730 attgttccgagtatcttcacctctgaaggtgacaaatacatcataataat---ttcttcttgatgaagtcccaagaactgaagatgagttgctggtgcta 33265826  T
Q  101 gccatctgaataagttcaatt 121  Q
    |||||||||||||||| ||||    
T  33265827 gccatctgaataagttaaatt 33265847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 33274874 - 33274991
Alignment:
Q  1 attgttgcgagtgtcttcacctctgaaagtgacaaatacatcataataatagtttcttcttgaagaagttacaagagctgtagatgagttgctgctgcta 100  Q
    |||||| ||||| |||||||||||||| ||||||||||||||||||||||   |||||||||| |||||  ||||| ||| ||||||||||||| |||||    
T  33274874 attgttccgagtatcttcacctctgaaggtgacaaatacatcataataat---ttcttcttgatgaagtcccaagaactgaagatgagttgctggtgcta 33274970  T
Q  101 gccatctgaataagttcaatt 121  Q
    |||||||||||||||| ||||    
T  33274971 gccatctgaataagttaaatt 33274991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 33403459 - 33403567
Alignment:
Q  1 attgttgcgagtgtcttcacctctgaaagtgacaaatacatcataataatagtttcttcttgaagaagttacaagagctgtagatgagttgctgctgcta 100  Q
    |||||| ||||||||||||||||| || |||| ||| ||||| |||||||   |||||||||||||||| |||||||||| ||| |||||||||||||||    
T  33403459 attgttccgagtgtcttcacctctaaaggtgataaacacatcgtaataat---ttcttcttgaagaagtcacaagagctgaagacgagttgctgctgcta 33403555  T
Q  101 gccatctgaata 112  Q
    ||||||||||||    
T  33403556 gccatctgaata 33403567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 33412766 - 33412876
Alignment:
Q  1 attgttgcgagtgtcttcacctctgaaagtgacaaatacatcataataatagtttcttcttgaagaagttacaagagctgtagatgagttgctgctgcta 100  Q
    ||||||||||||||||||||||||||| |||||||| ||||||||||||   ||||||||||||||||| |||||||||  |||||||||||| ||| |     
T  33412766 attgttgcgagtgtcttcacctctgaaggtgacaaacacatcataataa---tttcttcttgaagaagtcacaagagctaaagatgagttgctactgttg 33412862  T
Q  101 gccatctgaataag 114  Q
    ||||| ||| ||||    
T  33412863 gccatttgattaag 33412876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 33641849 - 33641746
Alignment:
Q  1 attgttgcgagtgtcttcacctctgaaagtgacaaatacatcataataatagtttcttcttgaagaagttacaagagctgtagatgagttgctgctgcta 100  Q
    ||||||||||||||||||||||||| | |||||||| |||||||||||||  |||||  ||||||||||||||||||||  ||||||||||||||| |||    
T  33641849 attgttgcgagtgtcttcacctctgtaggtgacaaacacatcataataat-ttttct--ttgaagaagttacaagagctaaagatgagttgctgctacta 33641753  T
Q  101 gccatct 107  Q
    |||||||    
T  33641752 gccatct 33641746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 33060403 - 33060511
Alignment:
Q  1 attgttgcgagtgtcttcacctctgaaagtgacaaatacatcataataatagtttcttcttgaagaagttacaagagctgtagatgagttgctgctgcta 100  Q
    |||||||||||| ||||||||||| || |||||||| |||||||||| ||  ||||||  ||||||||| |||||||||| |||||| ||||||||||||    
T  33060403 attgttgcgagtatcttcacctctaaaggtgacaaacacatcataatgatt-tttctt--tgaagaagtcacaagagctgaagatgatttgctgctgcta 33060499  T
Q  101 gccatctgaata 112  Q
    ||||||||||||    
T  33060500 gccatctgaata 33060511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 33361346 - 33361454
Alignment:
Q  1 attgttgcgagtgtcttcacctctgaaagtgacaaatacatcataataatagtttcttcttgaagaagttacaagagctgtagatgagttgctgctgcta 100  Q
    |||||||||||||||||||||||| ||  ||||||| |||||||||| ||  ||||||  ||||||||| |||||||||| |||||||||| ||||||||    
T  33361346 attgttgcgagtgtcttcacctctaaagatgacaaacacatcataatgatt-tttctt--tgaagaagtcacaagagctgaagatgagttgttgctgcta 33361442  T
Q  101 gccatctgaata 112  Q
    ||||||||||||    
T  33361443 gccatctgaata 33361454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 2 - 114
Target Start/End: Original strand, 33307335 - 33307444
Alignment:
Q  2 ttgttgcgagtgtcttcacctctgaaagtgacaaatacatcataataatagtttcttcttgaagaagttacaagagctgtagatgagttgctgctgctag 101  Q
    |||||||||||||||||||||||||| |||||||| |||||   |||||||||  ||||||||||||| |||||||||  ||| || ||| |||||||||    
T  33307335 ttgttgcgagtgtcttcacctctgaaggtgacaaacacatc---ataatagttgtttcttgaagaagtcacaagagctaaagaagaattgttgctgctag 33307431  T
Q  102 ccatctgaataag 114  Q
    |||||||| ||||    
T  33307432 ccatctgattaag 33307444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 83 - 113
Target Start/End: Original strand, 33288502 - 33288532
Alignment:
Q  83 gatgagttgctgctgctagccatctgaataa 113  Q
    |||||||||||||||||||||||||||||||    
T  33288502 gatgagttgctgctgctagccatctgaataa 33288532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 17437921 - 17437813
Alignment:
Q  1 attgttgcgagtgtcttcacctctgaaagtgacaaatacatcataataatagtttcttcttgaagaagttacaagagctgtagatgagttgctgctgcta 100  Q
    |||||||||||| ||||||||||| || |||||||| |||||||||| ||  ||||||  ||||||||| |||||||||| || ||| |||||||| |||    
T  17437921 attgttgcgagtatcttcacctctaaaggtgacaaacacatcataatgatt-tttctt--tgaagaagtcacaagagctgaagttgatttgctgctacta 17437825  T
Q  101 gccatctgaata 112  Q
    ||||||||||||    
T  17437824 gccatctgaata 17437813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 234 - 353
Target Start/End: Original strand, 11662784 - 11662909
Alignment:
Q  234 aaaaacacaaattcgtgaaaacctatttcaggaattaccttaagtcaatcaaattcgatgtctttatc------gtcgaaaagagtggcagcaagtcttt 327  Q
    |||||||||||||  | |||||| |||||| |||||||||||| ||  |||||||| |||||||||||       ||||||||||| | |||| ||||||    
T  11662784 aaaaacacaaattaatcaaaaccgatttcaagaattaccttaaatcgctcaaattcaatgtctttatcatgagtatcgaaaagagtaggagcaggtcttt 11662883  T
Q  328 gagaaagcgctggaggaggtgagaaa 353  Q
    |||||||| || ||||||||||||||    
T  11662884 gagaaagctctcgaggaggtgagaaa 11662909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1749 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold1749
Description:

Target: scaffold1749; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 994 - 1102
Alignment:
Q  1 attgttgcgagtgtcttcacctctgaaagtgacaaatacatcataataatagtttcttcttgaagaagttacaagagctgtagatgagttgctgctgcta 100  Q
    |||||||||||| |||||||||||||| |||||||| || |||||| |||   |||| ||||   |||  || ||||| ||||| |||||||||||||||    
T  994 attgttgcgagtatcttcacctctgaaggtgacaaacacgtcataacaat---ttctccttggcaaaggcaccagagccgtagacgagttgctgctgcta 1090  T
Q  101 gccatctgaata 112  Q
    ||||||||||||    
T  1091 gccatctgaata 1102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 9755 - 9863
Alignment:
Q  1 attgttgcgagtgtcttcacctctgaaagtgacaaatacatcataataatagtttcttcttgaagaagttacaagagctgtagatgagttgctgctgcta 100  Q
    |||||||||||| |||||||||||||| |||||||| || |||||| |||   |||| ||||   |||  || ||||| ||||| |||||||||||||||    
T  9755 attgttgcgagtatcttcacctctgaaggtgacaaacacgtcataacaat---ttctccttggcaaaggcaccagagccgtagacgagttgctgctgcta 9851  T
Q  101 gccatctgaata 112  Q
    ||||||||||||    
T  9852 gccatctgaata 9863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 31501358 - 31501309
Alignment:
Q  1 attgttgcgagtgtcttcacctctgaaagtgacaaatacatcataataat 50  Q
    |||||||||||||||||||||||| |||||||||||  ||||||||||||    
T  31501358 attgttgcgagtgtcttcacctctaaaagtgacaaacgcatcataataat 31501309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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