View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20954_low_60 (Length: 317)

Name: NF20954_low_60
Description: NF20954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20954_low_60
NF20954_low_60
[»] chr1 (1 HSPs)
chr1 (18-317)||(3744339-3744631)


Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 18 - 317
Target Start/End: Original strand, 3744339 - 3744631
Alignment:
Q  18 ctgagatggttgaacaatgaattatcaatcatcaattatgctagcccaaagctcgttccgtagaaggatttatcgcgtcaaaagtagcaagacatagtga 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| ||    
T  3744339 ctgagatggttgaacaatgaattatcaatcatcaattatgctagctcaaagctcgttccgtagaaggatttatcgcgtcataagtagcaagacatagcga 3744438  T
Q  118 ataaaatatccaacttaaaacaagaaaacatatgctaaatttaatcaaatacatcatatttccctctcttaatccacaattactaattcaaaatcaagaa 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||         
T  3744439 ataaaatatccaacttaaaacaagaaaacatatgctaaatttaatcaaatacatcatatttctctctcttaatccacaattactaattcaaaatc----- 3744533  T
Q  218 caaagaacaagaacaatcacaatcacagaaacagaataactgcattgcaaatcaaaattactaatttttattacatcaaaccaaataccatcacacaagc 317  Q
      ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3744534 --aagaacaagaacaatcaaaatcacagaaacagaataactgcattgcaaatcaaaattactaatttttattacatcaaaccaaataccatcacacaagc 3744631  T

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