View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20954_low_62 (Length: 313)
Name: NF20954_low_62
Description: NF20954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20954_low_62 |
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Alignment Details
Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 38 - 304
Target Start/End: Complemental strand, 41340647 - 41340381
Alignment:
| Q |
38 |
tggaaatgtgagttttatgaaaatgatataaattttagaaataatgatattatgattatgatacggtacttaaaatctttcttaaaagaattaatagaag |
137 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41340647 |
tggaaatgtgagttttatgaaaatgatataaattttagaaataatgatattatgattatgatacggtacttaaaatctttcttaaaagaattaatagaag |
41340548 |
T |
|
| Q |
138 |
tctaaatttaagtatatgtgtgactaatcattgtttagagaaaatataccagagtcttattatttatcatttacggccattctattcatacctgggagac |
237 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
41340547 |
tctaaatttaagtatatgtgtggctaatcattgtttagagaaaatataccacagtcttattatttatcatttacggccatcctattcatacctgggagac |
41340448 |
T |
|
| Q |
238 |
acttttgtaggatttggcagctagatagtcacatagctatatttggtgatattgtgttttcctatgt |
304 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41340447 |
acttttgtaggatttggcagctagatagtcacatagctatatttggtgatattgtgttttcctatgt |
41340381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 38 - 302
Target Start/End: Complemental strand, 10289167 - 10288904
Alignment:
| Q |
38 |
tggaaatgtgagttttatgaaaatgatataaattttagaaataatgatattatgattatgatacggtacttaaaatctttcttaaaagaattaatagaag |
137 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
10289167 |
tggaaatgtgagttt-atgaaaatgatataaattttagaaataatgatattatgattatgatacggtacttaaaatctttcttaaaaggattaatagaag |
10289069 |
T |
|
| Q |
138 |
tctaaatttaagtatatgtgtgactaatcattgtttagagaaaatataccagagtcttattatttatcatttacggccattctattcatacctgggagac |
237 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||| ||||||| |
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| T |
10289068 |
tctaaatttaagtatatgtgtggctaatcattgtttagagaaaatataccacagtcttattaattatcatttacggctattctattcatacttgggagat |
10288969 |
T |
|
| Q |
238 |
acttttgtaggatttggcagctagatagtcacatagctatatttggtgatattgtgttttcctat |
302 |
Q |
| |
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||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |
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| T |
10288968 |
actttcgtaggatttggcagctagttagtcacatagctatatttggtgatattgtgctttcctat |
10288904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 44 - 85
Target Start/End: Original strand, 48576605 - 48576646
Alignment:
| Q |
44 |
tgtgagttttatgaaaatgatataaattttagaaataatgat |
85 |
Q |
| |
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||||||||||||||||| ||||||||| |||||||||||||| |
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| T |
48576605 |
tgtgagttttatgaaaaggatataaatgttagaaataatgat |
48576646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 38 - 302
Target Start/End: Complemental strand, 7337070 - 7336807
Alignment:
| Q |
38 |
tggaaatgtgagttttatgaaaatgatataaattttagaaataatgatattatgattatgatacggtacttaaaatctttcttaaaagaattaatagaag |
137 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
7337070 |
tggaaatgtgagttt-atgaaaatgatataaattttagaaataatgatattatgattatgatacggtacttaaaatctttcttaaaaggattaatagaag |
7336972 |
T |
|
| Q |
138 |
tctaaatttaagtatatgtgtgactaatcattgtttagagaaaatataccagagtcttattatttatcatttacggccattctattcatacctgggagac |
237 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||| ||||||| |
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| T |
7336971 |
tctaaatttaagtatatgtgtggctaatcattgtttagagaaaatataccacagtcttattaattatcatttacggctattctattcatacttgggagat |
7336872 |
T |
|
| Q |
238 |
acttttgtaggatttggcagctagatagtcacatagctatatttggtgatattgtgttttcctat |
302 |
Q |
| |
|
||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |
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| T |
7336871 |
actttcgtaggatttggcagctagttagtcacatagctatatttggtgatattgtgctttcctat |
7336807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 38 - 302
Target Start/End: Complemental strand, 43278223 - 43277963
Alignment:
| Q |
38 |
tggaaatgtgagttttatgaaaatgatataaattttagaaataatgatattatgattatgatacggtacttaaaatctttcttaaaagaattaatagaag |
137 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |
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| T |
43278223 |
tggaaatgtgagttttatgaaaatgatataaattttagaaataatgatattatgattatgatacggtacttcaaatctttcttaaaagaat----agaag |
43278128 |
T |
|
| Q |
138 |
tctaaatttaagtatatgtgtgactaatcattgtttagagaaaatataccagagtcttattatttatcatttacggccattctattcatacctgggagac |
237 |
Q |
| |
|
||| | |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
43278127 |
tctgagtttaagtatatgtgtggctaatcattgtttagagaaaatataccacagtcttattatttatcatttacggccattctattcatacttgggagac |
43278028 |
T |
|
| Q |
238 |
acttttgtaggatttggcagctagatagtcacatagctatatttggtgatattgtgttttcctat |
302 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||| |||||||| |
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| T |
43278027 |
acttttgtaggatttggcaactagatagtcatatagctatatttagtgatattgtgctttcctat |
43277963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 240 - 302
Target Start/End: Original strand, 15035856 - 15035919
Alignment:
| Q |
240 |
ttttgtaggattt-ggcagctagatagtcacatagctatatttggtgatattgtgttttcctat |
302 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| ||| ||||| |||||||||| |||||||| |
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| T |
15035856 |
ttttgtaggattttggcagctagatagtcacataactacatttgatgatattgtgctttcctat |
15035919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 38 - 302
Target Start/End: Complemental strand, 43407743 - 43407480
Alignment:
| Q |
38 |
tggaaatgtgagttttatgaaaatgatataaattttagaaataatgatattatgattatgatacggtacttaaaatctttcttaaaagaattaatagaag |
137 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
43407743 |
tggaaatgtgagttt-atgaaaatgatataaattttagaaataatgatattatgattatgatacggtacttaaaatctttcttaaaaggattaatagaag |
43407645 |
T |
|
| Q |
138 |
tctaaatttaagtatatgtgtgactaatcattgtttagagaaaatataccagagtcttattatttatcatttacggccattctattcatacctgggagac |
237 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||| ||||||| |
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|
| T |
43407644 |
tctaaatttaagtatatgtgtggctaatcattgtttagagaaaatataccacagtcttattaattatcatttacggctattctattcatacttgggagat |
43407545 |
T |
|
| Q |
238 |
acttttgtaggatttggcagctagatagtcacatagctatatttggtgatattgtgttttcctat |
302 |
Q |
| |
|
||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |
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| T |
43407544 |
actttcgtaggatttggcagctagttagtcacatagctatatttggtgatattgtgctttcctat |
43407480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 39 - 173
Target Start/End: Original strand, 38001127 - 38001261
Alignment:
| Q |
39 |
ggaaatgtgagttttatgaaaatgatataaattttagaaataatgatattatgattatgatacggtacttaaaatctttcttaaaagaattaatagaagt |
138 |
Q |
| |
|
||||| ||||||||| ||| |||||| |||||||||||||||||| |||||| |||||||| ||||||||||||||||||||| ||||||||||||| |
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| T |
38001127 |
ggaaacgtgagttttgtgagaatgatggaaattttagaaataatgaaattatgtttatgataaagtacttaaaatctttcttaaataaattaatagaagt |
38001226 |
T |
|
| Q |
139 |
ctaaatttaagtatatgtgtgactaatcattgttt |
173 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |
|
|
| T |
38001227 |
ctaaattgtagtatatgtgtgactaatcattgttt |
38001261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 126 - 173
Target Start/End: Complemental strand, 41958324 - 41958277
Alignment:
| Q |
126 |
aattaatagaagtctaaatttaagtatatgtgtgactaatcattgttt |
173 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
41958324 |
aattaatagaagtctaaattgtagtatatgtgtgactaatcattgttt |
41958277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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