View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20954_low_68 (Length: 299)
Name: NF20954_low_68
Description: NF20954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20954_low_68 |
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Alignment Details
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 8 - 286
Target Start/End: Original strand, 11544203 - 11544481
Alignment:
| Q |
8 |
ataatactcaacaaaagatattattacatgttttatgttaggtcacttgggttgaacatgtggaagtggaagataagatccacacacattacgtgtatag |
107 |
Q |
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| T |
11544203 |
ataatactcaacacaagatattattacatgttttatgttaggtcacttgggttgaacatgtggaagtggaagataagatccatacacattacgtgtatag |
11544302 |
T |
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| Q |
108 |
agatcttgttggaaactataatttatatggagctgaaagctggattaaggagcttcaaagaatatgtgagagatctttaggctctaatgttgaagcaata |
207 |
Q |
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| T |
11544303 |
agatcttgttgggaactataatttatatggagctgaaagctggattaaggagcttcaaagaatgtgtgagagatctttaggctcttatgttgaagcaata |
11544402 |
T |
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| Q |
208 |
cctgttgaagaaactataggaggttaatcacactttgtcttctaaatttacccttccaaatatctctattcatctattt |
286 |
Q |
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| T |
11544403 |
cctgttgaagaaactataggaggttaatcacactttgttttctaaatttacccttccaaaaatctctattcatctattt |
11544481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 9 - 286
Target Start/End: Original strand, 11557625 - 11557897
Alignment:
| Q |
9 |
taatactcaacaaaagatattattacatgttttatgttaggtcacttgggttgaacatgtggaagtggaagataagatccacacacattacgtgtataga |
108 |
Q |
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| T |
11557625 |
taatactcaacaaaagatattattacatgttttatgttaggtcacttgggttgaacatgtggaagtggaagataagatccatacacattacgtgtataga |
11557724 |
T |
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| Q |
109 |
gatcttgttggaaactataatttatatggagctgaaagctggattaaggagcttcaaagaatatgtgagagatctttaggctctaatgttgaagcaatac |
208 |
Q |
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| T |
11557725 |
gatcttgttggtgaatataatttatatggagctgaaagctggattaaggagcttcaaagaatgtgcgagagatctttaggctctaatgttgaagcaatac |
11557824 |
T |
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| Q |
209 |
ctgttgaagaaactataggaggttaatcacactttgtcttctaaatttacccttccaaatatctctattcatctattt |
286 |
Q |
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| T |
11557825 |
ctgttgaagaaactataggaggttaatc-----ttgtcttctaaatttacccttccaaatatctctattcatctattt |
11557897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 9 - 95
Target Start/End: Complemental strand, 22823156 - 22823070
Alignment:
| Q |
9 |
taatactcaacaaaagatattattacatgttttatgttaggtcacttgggttgaacatgtggaagtggaagataagatccacacaca |
95 |
Q |
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| T |
22823156 |
taatactcaacaaaagatattattacatgttttatggtaggtcacttgggttgaacatgtggaagtggaagataagatccatacaca |
22823070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 9 - 95
Target Start/End: Complemental strand, 22831962 - 22831876
Alignment:
| Q |
9 |
taatactcaacaaaagatattattacatgttttatgttaggtcacttgggttgaacatgtggaagtggaagataagatccacacaca |
95 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
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| T |
22831962 |
taatactcaacaaaagatattaatacatgttttatgttaggtcactcgggttgaacatgtggaagtggaagataagatccatacaca |
22831876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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