View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20954_low_70 (Length: 298)
Name: NF20954_low_70
Description: NF20954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20954_low_70 |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 85 - 281
Target Start/End: Complemental strand, 7044198 - 7044002
Alignment:
| Q |
85 |
ttcaacaccgtcacgaatattataaccactttttcatccaggattgtaattttcaataaatgtttgattcattggctttggcatgtgaagactaaggtag |
184 |
Q |
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| T |
7044198 |
ttcaacaccgtcacgaatattataaccactttttcatccaggattgtaattttcaataaatgtttgattcattggctttggcatgtgaagactaaggtag |
7044099 |
T |
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| Q |
185 |
gttgtcacaaatatagattggtataagtagtattattcccaatcgaaagtatgagaattaaaaagaatgcatgattacaaataagaaaaattcaaag |
281 |
Q |
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| T |
7044098 |
gttgtcacaaatatagattggtataagtagtattattcccaatcgaaagtatgagaattaaaaagaatgcatgattacaaataagaaaaattcaaag |
7044002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 170; Significance: 3e-91; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 85 - 281
Target Start/End: Complemental strand, 17722879 - 17722678
Alignment:
| Q |
85 |
ttcaacaccgtcacgaatattataaccactttttcatccaggattgtaattttcaataaatgtttgattcattggctttggcatgtgaagactaaggtag |
184 |
Q |
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| T |
17722879 |
ttcaacaccgtcacgaatattataaccactttttcatcaaggattgtaattttcaataaatgtttgattcattggctttggcatgtgaagactaaggtag |
17722780 |
T |
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| Q |
185 |
gttgtcacaaatatagattggtataagtag-----tattattcccaatcgaaagtatgagaattaaaaagaatgcatgattacaaataagaaaaattcaa |
279 |
Q |
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| T |
17722779 |
gctgtcacaaatatagattggtataagtagtattgtattattcccaatccaaagtatgagaattaaaaagaatgcatgattacaaataagaaaaattcaa |
17722680 |
T |
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| Q |
280 |
ag |
281 |
Q |
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|| |
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| T |
17722679 |
ag |
17722678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 188 - 265
Target Start/End: Complemental strand, 22628593 - 22628512
Alignment:
| Q |
188 |
gtcacaaatatagattggtata--agtagtattattcccaatcgaaagtat--gagaattaaaaagaatgcatgattacaaa |
265 |
Q |
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|||||||||||| ||||||||| |||| ||||||||||| || || |||| |||||| ||||||||||||||| |||||| |
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| T |
22628593 |
gtcacaaatatatattggtatataagtaatattattcccactccaaggtatatgagaataaaaaagaatgcatgaatacaaa |
22628512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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