View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20954_low_71 (Length: 295)
Name: NF20954_low_71
Description: NF20954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20954_low_71 |
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Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 44836463 - 44836186
Alignment:
| Q |
1 |
aaataattatattcttacccaagactgagccgaatatcacaaaacacaacatgtatatcgctgataaggcaagaaaataaccatatgtaatcatccaata |
100 |
Q |
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| T |
44836463 |
aaataattttattcttacccaagactgagccgaatatcacaaaacacaacatgtatatcgctgataaggcaagaaaataaccatatgtaatcatccaata |
44836364 |
T |
|
| Q |
101 |
tggcccatcaccaagaccatgcattttcatcatgattcttaatttttgttgcttctcataaaccagtgatgtcaaaacaacctatataaaatgcatatat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44836363 |
tggcccatcaccaagaccatgcattttcatcatgattcttaatttttgttgcttctcataaaccagtgatgtcaaaacaacctatataaaatgcatatat |
44836264 |
T |
|
| Q |
201 |
aagtacgctaaaacatctattctgttgtgtgtgcattagatgttaggtacgattattgactttgaagatgagtcatgt |
278 |
Q |
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| T |
44836263 |
aagtacgctaaaacatctattctgttgtgtgtgcattagatgttaggtacgattattgactttgaagatgagtaatgt |
44836186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 44862094 - 44861894
Alignment:
| Q |
1 |
aaataattatattcttacccaagactgagccgaatatcacaaaacacaacatgtatatcgctgataaggcaagaaaataaccatatgtaatcatccaata |
100 |
Q |
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||||| ||||||||||||| |||||||||||||||||||| |||||||| ||||| ||| | ||||||||||||||||| ||||||| ||||| |||||| |
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| T |
44862094 |
aaatagttatattcttacctaagactgagccgaatatcacgaaacacaatatgtagatcacagataaggcaagaaaatatccatatgaaatcaaccaata |
44861995 |
T |
|
| Q |
101 |
tggcccatcaccaagaccatgcattttcatcatgattcttaatttttgttgcttctcataaaccagtgatgtcaaaacaacctatataaaatgcatatat |
200 |
Q |
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| T |
44861994 |
tggcccgtcaccaagaccatgcattttcatcatgattcttaatttttgttgcttctcataaaccagtgatgtcagaataacctgcataaaatgcatatat |
44861895 |
T |
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| Q |
201 |
a |
201 |
Q |
| |
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| |
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|
| T |
44861894 |
a |
44861894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 11 - 195
Target Start/End: Complemental strand, 44879874 - 44879690
Alignment:
| Q |
11 |
attcttacccaagactgagccgaatatcacaaaacacaacatgtatatcgctgataaggcaagaaaataaccatatgtaatcatccaatatggcccatca |
110 |
Q |
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||||||||| ||| ||||||||| ||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||| |||||||||||| ||| |
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| T |
44879874 |
attcttacctaaggatgagccgaacatcacaaaacacaacatatagatcgctgataatgcaagaaaataaccatatgtaatcaaccaatatggcccgtca |
44879775 |
T |
|
| Q |
111 |
ccaagaccatgcattttcatcatgattcttaatttttgttgcttctcataaaccagtgatgtcaaaacaacctatataaaatgca |
195 |
Q |
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| T |
44879774 |
ccaagaccatgcattttcatcatgattcttaatttttgttgcttctcataaaccagtgatgtcagaataacctacataaaatgca |
44879690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 7 - 193
Target Start/End: Complemental strand, 44897402 - 44897216
Alignment:
| Q |
7 |
ttatattcttacccaagactgagccgaatatcacaaaacacaacatgtatatcgctgataaggcaagaaaataaccatatgtaatcatccaatatggccc |
106 |
Q |
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||||||||||||| | ||||||||| ||||||||||| ||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||| || |
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| T |
44897402 |
ttatattcttacctaggactgagccaaatatcacaaagcacaacatgtagatcactgataaggcaaggaaataaccatatgtaatcatccaatatggtcc |
44897303 |
T |
|
| Q |
107 |
atcaccaagaccatgcattttcatcatgattcttaatttttgttgcttctcataaaccagtgatgtcaaaacaacctatataaaatg |
193 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||||||| || ||||| |
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| T |
44897302 |
atcaccaagaccatgcattttcatcatgattctcaatttttgttgcttctcataaatcagtgatgtcagcacaacctacattaaatg |
44897216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 7 - 195
Target Start/End: Complemental strand, 44848428 - 44848240
Alignment:
| Q |
7 |
ttatattcttacccaagactgagccgaatatcacaaaacacaacatgtatatcgctgataaggcaagaaaataaccatatgtaatcatccaatatggccc |
106 |
Q |
| |
|
||||||||||||| ||||||||||| || |||||||||| || ||||| ||| | ||||||||||||||||| || |||| |||||||||||||||||| |
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| T |
44848428 |
ttatattcttaccaaagactgagccaaacgtcacaaaacataaaatgtagatcaccgataaggcaagaaaatagccgtatgaaatcatccaatatggccc |
44848329 |
T |
|
| Q |
107 |
atcaccaagaccatgcattttcatcatgattcttaatttttgttgcttctcataaaccagtgatgtcaaaacaacctatataaaatgca |
195 |
Q |
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| T |
44848328 |
gtcaccaagaccatgcattttcatcatgattcttaatttttgttgcttctcataaaccagtgatgtcagaataacctacataaaatgca |
44848240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 278
Target Start/End: Complemental strand, 44848201 - 44848135
Alignment:
| Q |
212 |
aacatctattctgttgtgtgtgcattagatgttaggtacgattattgactttgaagatgagtcatgt |
278 |
Q |
| |
|
||||| ||||||| |||| ||||||||||||||| ||| ||| ||||||||||| | ||||||||| |
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| T |
44848201 |
aacatatattctgctgtgcttgcattagatgttagatacaattgttgactttgaatacgagtcatgt |
44848135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 23 - 172
Target Start/End: Original strand, 12927430 - 12927579
Alignment:
| Q |
23 |
gactgagccgaatatcacaaaacacaacatgtatatcgctgataaggcaagaaaataaccatatgtaatcatccaatatggcccatcaccaagaccatgc |
122 |
Q |
| |
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||||| ||| ||||| || |||||||||||||| || ||||| |||||||||||||| || | ||| |||||||||||||||||||| ||||||||| |
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| T |
12927430 |
gactgtgccaaatatgacgaaacacaacatgtagataattgatatggcaagaaaataactgtaagaaataatccaatatggcccatcaccgagaccatgc |
12927529 |
T |
|
| Q |
123 |
attttcatcatgattcttaatttttgttgcttctcataaaccagtgatgt |
172 |
Q |
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||||||||||||||||| || |||||||||||||| ||||| | |||||| |
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| T |
12927530 |
attttcatcatgattctcaaattttgttgcttctcgtaaactaatgatgt |
12927579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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