View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20954_low_72 (Length: 295)
Name: NF20954_low_72
Description: NF20954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20954_low_72 |
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Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 3 - 290
Target Start/End: Complemental strand, 40753589 - 40753302
Alignment:
| Q |
3 |
atttagggcaagaccgagtcatcgttcatgagtgtgctagtgacttcagatgtcccgatccattgagaaaataagacttaatctaatccgaaacaaagat |
102 |
Q |
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| T |
40753589 |
atttagggcaagaccgagtcatcgttcgtgagtgtgctagtgacttgaggtgacccgatccatcgagaaaataagacttaacgtagtctgaaacaaagat |
40753490 |
T |
|
| Q |
103 |
aaaaggtagacccttactacttttgataagaaactataagttttaataataaaaagggaaatagatttaatatttttcaaaatacactggagaaaagtaa |
202 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
40753489 |
aaaaggtagacccttactacttttgataagaaactataatttttaataataaaaagggaaatagatttaatatttttcaaaatacaccagagaaaagtaa |
40753390 |
T |
|
| Q |
203 |
aagtccatcttctttcaaaataaagtaaaagtccatctttaaacccttgttgggatgtctatattagacaaaccctcgtttttctgtg |
290 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40753389 |
aagtccatctcctttcaaaataaagtaaaagtccatctttaaacccttgttgggatgtctatattagacaaaccctcgtttttctgtg |
40753302 |
T |
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