View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20954_low_81 (Length: 268)
Name: NF20954_low_81
Description: NF20954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20954_low_81 |
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Alignment Details
Target: chr3 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 17 - 256
Target Start/End: Original strand, 14993149 - 14993385
Alignment:
| Q |
17 |
tttttcttttaatttcttctatagtcagaacaaaatatnnnnnnntttaatagaacagatagatacctgaattcgggtgcctccttctatataagtggtt |
116 |
Q |
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| T |
14993149 |
tttttcttttaattttt---atagtcagaacaaaatataaaacaatttaatagaacaaatagatacctgaattcgggcgcctccttctatagaagtggtt |
14993245 |
T |
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| Q |
117 |
gcaaagaaacatcatcatatttccaaattgctattttatcacaatctgacaatctttccttttccctaaaatcaaattttcactaatttttgcattaaca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
14993246 |
gcaaagaaacatcatcatatttccaaattgctattttatcacaatctgactatctttccttttccctaaaatcaatctttcactaatttttgcattaaca |
14993345 |
T |
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| Q |
217 |
caaccattaaggttctactcttgatgattgtattgtccct |
256 |
Q |
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||||||||||||||||||||||||||||||||||| |||| |
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| T |
14993346 |
caaccattaaggttctactcttgatgattgtattgcccct |
14993385 |
T |
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