View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20954_low_83 (Length: 261)
Name: NF20954_low_83
Description: NF20954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20954_low_83 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 14882794 - 14882547
Alignment:
| Q |
1 |
attgtcataaactaagtgtgttggatttggctgataataacctctctggtggaattcccgcgacattcgggtaccttaaagatttgaagcagttcatgct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14882794 |
attgtcataaactaagtgtgttggatttggctgataataacctctctggtggaattcccgcgacattcgggtaccttaaagatttgaagcagttcatgct |
14882695 |
T |
|
| Q |
101 |
ttacaacaattctcttgaaggtagtattcctcagcaaatggtggatgttgcaaatatgacaagagttaatctttcaaagaataggctgaatggaagtttg |
200 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14882694 |
ttacaacaattctcttgaaggtggtattcctcagcaaatggtgaatgtagcaaatttgacaagagttaatctttcaaagaataggctgaatggaagtttg |
14882595 |
T |
|
| Q |
201 |
gctccattgtgtagctccaaagattttctttcttttgatgtcacaggt |
248 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
14882594 |
gctccattgtgtagctccagagattttctttcttttgatgtcacaggt |
14882547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 217
Target Start/End: Original strand, 39005005 - 39005219
Alignment:
| Q |
3 |
tgtcataaactaagtgtgttggatttggctgataataacctctctggtggaattcccgcgacattcgggtaccttaaagatttgaagcagttcatgcttt |
102 |
Q |
| |
|
||||||||||| | | | |||||||||||||||||| | |||||||| | |||||| || || || || | |||| | ||| ||||| ||||||| | |
|
|
| T |
39005005 |
tgtcataaactgaatatcttggatttggctgataatcagctctctggcgcaattcctgcaaccttgggattccttgagtcattgcagcagctcatgctct |
39005104 |
T |
|
| Q |
103 |
acaacaattctcttgaaggtagtattcctcagcaaatggtggatgttgcaaatatgacaagagttaatctttcaaagaataggctgaatggaagtttggc |
202 |
Q |
| |
|
||||||| ||||||||||||| ||||||| ||| || | |||| ||||| |||| || || ||||||||||||||||| ||||||| ||| | || |
|
|
| T |
39005105 |
acaacaactctcttgaaggtaaccttcctcaccaattgataaatgtagcaaacttgaccagggtgaatctttcaaagaatagattgaatggcagtatagc |
39005204 |
T |
|
| Q |
203 |
tccattgtgtagctc |
217 |
Q |
| |
|
| | ||||||||||| |
|
|
| T |
39005205 |
tgctttgtgtagctc |
39005219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University