View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20954_low_89 (Length: 255)

Name: NF20954_low_89
Description: NF20954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20954_low_89
NF20954_low_89
[»] chr3 (18 HSPs)
chr3 (1-245)||(2630935-2631176)
chr3 (77-200)||(9594901-9595021)
chr3 (77-203)||(9562232-9562355)
chr3 (78-204)||(2491752-2491875)
chr3 (81-204)||(7324683-7324803)
chr3 (77-200)||(9566094-9566214)
chr3 (78-203)||(2474775-2474898)
chr3 (79-200)||(754880-754998)
chr3 (76-207)||(7443253-7443381)
chr3 (79-207)||(747402-747527)
chr3 (76-204)||(2476305-2476430)
chr3 (79-198)||(2501828-2501944)
chr3 (141-227)||(768591-768674)
chr3 (79-207)||(679484-679609)
chr3 (79-209)||(7334531-7334658)
chr3 (79-204)||(2644617-2644739)
chr3 (1-35)||(2491696-2491730)
chr3 (1-33)||(2644761-2644793)


Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 2630935 - 2631176
Alignment:
Q  1 ttagaaagtttaagttattgcctccattggaaaatcaagacaaaagtgctccttttaccataattgttccttataccataagctttgggtatgattgttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2630935 ttagaaagtttaagttattgcctccattggaaaatcaagacaaaagtgctccttttaccataattgttccttataccataagctttgggtatgattgttt 2631034  T
Q  101 cattgataagtataaggtcattgctgtttcttccaaaaatgaagtttttgtttatactttagtagggactgattattggaaaagaatagacgacatccca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||   ||||||||||||||||||||||||||||||||||||||    
T  2631035 cattgataagtataaggtcattgctgtttcttccaaaaatgaagtttttctttatactt---tagggactgattattggaaaagaatagacgacatccca 2631131  T
Q  201 tattattgcacaatctgtagatcgggattatatgtctgtgttgct 245  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||    
T  2631132 tattattgcacaatctgtagatcgggattatatgtcagtggtgct 2631176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 77 - 200
Target Start/End: Complemental strand, 9595021 - 9594901
Alignment:
Q  77 cataagctttgggtatgattgtttcattgataagtataaggtcattgctgtttcttccaaaaatgaagtttttgtttatactttagtagggactgattat 176  Q
    ||||||||| |||||||||  |||||||||||||||||||||||||| | || ||||||||||||| ||||||||||||||||   | ||||||||||||    
T  9595021 cataagcttcgggtatgatcatttcattgataagtataaggtcattgattttgcttccaaaaatgatgtttttgtttatactt---tggggactgattat 9594925  T
Q  177 tggaaaagaatagacgacatccca 200  Q
    |||| ||||||||| |||||||||    
T  9594924 tggacaagaatagaggacatccca 9594901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 77 - 203
Target Start/End: Complemental strand, 9562355 - 9562232
Alignment:
Q  77 cataagctttgggtatgattgtttcattgataagtataaggtcattgctgtttcttccaaaaatgaagtttttgtttatactttagtagggactgattat 176  Q
    ||||| ||| |||||||||  |||||||||||| ||||||||||||| ||||||| ||||||||||||||  |||||||||||   | ||||||||||||    
T  9562355 cataaacttcgggtatgatcatttcattgataattataaggtcattgttgtttctaccaaaaatgaagttagtgtttatactt---tggggactgattat 9562259  T
Q  177 tggaaaagaatagacgacatcccatat 203  Q
    ||||| |||||||| ||||||||||||    
T  9562258 tggaagagaatagaggacatcccatat 9562232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 78 - 204
Target Start/End: Original strand, 2491752 - 2491875
Alignment:
Q  78 ataagctttgggtatgattgtttcattgataagtataaggtcattgctgtttcttccaaaaatgaagtttttgtttatactttagtagggactgattatt 177  Q
    ||||||||||||||||||  |||||||||| | ||||||||||||| |||||||||| |||||||||||  |||||||||||   | |||||||||||||    
T  2491752 ataagctttgggtatgatcatttcattgatgattataaggtcattggtgtttcttccgaaaatgaagttagtgtttatactt---tggggactgattatt 2491848  T
Q  178 ggaaaagaatagacgacatcccatatt 204  Q
    ||| ||||||  | |||||||||||||    
T  2491849 ggacaagaatcaaggacatcccatatt 2491875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 81 - 204
Target Start/End: Complemental strand, 7324803 - 7324683
Alignment:
Q  81 agctttgggtatgattgtttcattgataagtataaggtcattgctgtttcttccaaaaatgaagtttttgtttatactttagtagggactgattattgga 180  Q
    ||||||||||| |||  ||| |||||||| ||||||||||||| |||||||||||||||| |||||  |||| ||||||   | ||||||||||||||||    
T  7324803 agctttgggtacgatcatttaattgataactataaggtcattgttgtttcttccaaaaataaagttagtgttaatactt---tggggactgattattgga 7324707  T
Q  181 aaagaatagacgacatcccatatt 204  Q
     ||||||||| |||||||||||||    
T  7324706 caagaatagaggacatcccatatt 7324683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 77 - 200
Target Start/End: Complemental strand, 9566214 - 9566094
Alignment:
Q  77 cataagctttgggtatgattgtttcattgataagtataaggtcattgctgtttcttccaaaaatgaagtttttgtttatactttagtagggactgattat 176  Q
    |||||| ||||||||||||  |||||||||||| |||||| ||||| |||||||| | ||||||||||||  |||||||||||   | ||||||||||||    
T  9566214 cataagttttgggtatgatcatttcattgataattataagctcatttctgtttctacaaaaaatgaagttagtgtttatactt---tggggactgattat 9566118  T
Q  177 tggaaaagaatagacgacatccca 200  Q
    |||| ||||||||| |||||||||    
T  9566117 tggacaagaatagaggacatccca 9566094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 78 - 203
Target Start/End: Original strand, 2474775 - 2474898
Alignment:
Q  78 ataagctttgggtatgattgtttcattgataagtataaggtcattgctgtttcttccaaaaatgaagtttttgtttatactttagtagggactgattatt 177  Q
    ||||||||||| ||||||  |||||||||||| || |||| |||||   ||||||||||||||||||||  |||| |||||||  || ||||||||||||    
T  2474775 ataagctttggatatgatcatttcattgataattacaaggccattgtattttcttccaaaaatgaagttagtgttaatacttt--taaggactgattatt 2474872  T
Q  178 ggaaaagaatagacgacatcccatat 203  Q
    ||| ||||||||| ||||||||||||    
T  2474873 ggacaagaatagaggacatcccatat 2474898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 79 - 200
Target Start/End: Complemental strand, 754998 - 754880
Alignment:
Q  79 taagctttgggtatgattgtttcattgataagtataaggtcattgctgtttcttccaaaaatgaagtttttgtttatactttagtagggactgattattg 178  Q
    |||||||||||||||||  ||||||| |||| || ||||||||| |||||||| | ||||||||||||| |||||||||   | | ||||||||||||||    
T  754998 taagctttgggtatgatcatttcattcataattacaaggtcatttctgtttctacaaaaaatgaagtttgtgtttatac---attggggactgattattg 754902  T
Q  179 gaaaagaatagacgacatccca 200  Q
    || ||||||||| || ||||||    
T  754901 gacaagaatagaggatatccca 754880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 76 - 207
Target Start/End: Complemental strand, 7443381 - 7443253
Alignment:
Q  76 ccataagctttgggtatgattgtttcattgataagtataaggtcattgctgtttcttccaaaaatgaagtttttgtttatactttagtagggactgatta 175  Q
    ||||||| ||||||||||||  |||||||||||| ||||| ||  ||||| ||||||||||| |||| ||||||||| || |||   | |||||||||||    
T  7443381 ccataagttttgggtatgatcatttcattgataattataaagttgttgctatttcttccaaatatgaggtttttgttaatgctt---tggggactgatta 7443285  T
Q  176 ttggaaaagaatagacgacatcccatattatt 207  Q
    ||||| |||||||||  ||||||| |||||||    
T  7443284 ttggagaagaatagagaacatcccttattatt 7443253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 79 - 207
Target Start/End: Complemental strand, 747527 - 747402
Alignment:
Q  79 taagctttgggtatgattgtttcattgataagtataaggtcattgctgtttcttccaaaaatgaagtttttgtttatactttagtagggactgattattg 178  Q
    |||||||||| ||||||  |||||||||||| ||||||||| ||| |||||||||  |||| || |||||| || ||||||   | ||| ||||||||||    
T  747527 taagctttggatatgatcatttcattgataattataaggtcgttgttgtttcttcagaaaaagaggttttttttaatactt---tgggggctgattattg 747431  T
Q  179 gaaaagaatagacgacatcccatattatt 207  Q
    |||||||||||| | ||||||| ||||||    
T  747430 gaaaagaatagagggcatcccacattatt 747402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 76 - 204
Target Start/End: Original strand, 2476305 - 2476430
Alignment:
Q  76 ccataagctttgggtatgattgtttcattgataagtataaggtcattgctgtttcttccaaaaatgaagtttttgtttatactttagtagggactgatta 175  Q
    ||||||||||||||||||||  ||  |||||||| || |||||||||  |||||||  |||||| ||||||  |||| ||||||   | |||||||||||    
T  2476305 ccataagctttgggtatgatcattctattgataactacaaggtcattcttgtttctgacaaaaacgaagttagtgttaatactt---tggggactgatta 2476401  T
Q  176 ttggaaaagaatagacgacatcccatatt 204  Q
    ||||| ||||||  | |||||||||||||    
T  2476402 ttggacaagaatgcaggacatcccatatt 2476430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 79 - 198
Target Start/End: Original strand, 2501828 - 2501944
Alignment:
Q  79 taagctttgggtatgattgtttcattgataagtataaggtcattgctgtttcttccaaaaatgaagtttttgtttatactttagtagggactgattattg 178  Q
    |||||||||| ||||||  |||||||||||| ||||||||||||| |||||||  | |||||||||||   ||| ||||||   | ||||||||||||||    
T  2501828 taagctttggatatgatcatttcattgataattataaggtcattgttgtttctgacgaaaatgaagttagggttaatactt---tggggactgattattg 2501924  T
Q  179 gaaaagaatagacgacatcc 198  Q
    || ||  ||||| |||||||    
T  2501925 gagaaagatagaggacatcc 2501944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 141 - 227
Target Start/End: Complemental strand, 768674 - 768591
Alignment:
Q  141 gaagtttttgtttatactttagtagggactgattattggaaaagaatagacgacatcccatattattgcacaatctgtagatcggga 227  Q
    |||||||||||||||||||| | |   || |||||||||| ||||||||| |||||||||||| ||| | |||||||| ||||||||    
T  768674 gaagtttttgtttatactttggga---acagattattggagaagaatagaggacatcccatatgattactcaatctgtcgatcggga 768591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 79 - 207
Target Start/End: Complemental strand, 679609 - 679484
Alignment:
Q  79 taagctttgggtatgattgtttcattgataagtataaggtcattgctgtttcttccaaaaatgaagtttttgtttatactttagtagggactgattattg 178  Q
    |||||||||| ||||||  ||||||||||||  |||||||  ||| |||||||||  |||| || |||| |||| ||||||| |  |||| |||||||||    
T  679609 taagctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgg--ggga-tgattattg 679513  T
Q  179 gaaaagaatagacgacatcccatattatt 207  Q
    || ||||||||| | ||||||| ||||||    
T  679512 gacaagaatagagggcatcccacattatt 679484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 209
Target Start/End: Complemental strand, 7334658 - 7334531
Alignment:
Q  79 taagctttgggtatgattgtttcattgataagtataaggtcattgctgtttcttccaaaaatgaagtttttgtttatactttagtagggactgattattg 178  Q
    ||||||| || ||||||  |||||||||||| ||||||||| |||||||||||   |||||  |||||  |||||||||||   | || |||||||||||    
T  7334658 taagcttcggatatgatcatttcattgataattataaggtcgttgctgtttctgtaaaaaaaaaagttagtgtttatactt---tgggaactgattattg 7334562  T
Q  179 gaaaagaatagacgacatcccatattattgc 209  Q
    ||||  |||||| | ||| |||||| |||||    
T  7334561 gaaacaaatagatggcattccatatgattgc 7334531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 79 - 204
Target Start/End: Complemental strand, 2644739 - 2644617
Alignment:
Q  79 taagctttgggtatgattgtttcattgataagtataaggtcattgctgtttcttccaaaaatgaagtttttgtttatactttagtagggactgattattg 178  Q
    |||||||||| ||||||   ||| ||||||| ||||||||||||  |||||||  | |||||||||||   ||| ||||||   | ||||||||||||||    
T  2644739 taagctttggatatgatcacttcgttgataattataaggtcattattgtttctgacgaaaatgaagttagggttaatactt---tggggactgattattg 2644643  T
Q  179 gaaaagaatagacgacatcccatatt 204  Q
    || ||||||| | ||||| |||||||    
T  2644642 gacaagaatacaggacattccatatt 2644617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 2491696 - 2491730
Alignment:
Q  1 ttagaaagtttaagttattgcctccattggaaaat 35  Q
    ||||||||||||||||||||||||| |||||||||    
T  2491696 ttagaaagtttaagttattgcctcctttggaaaat 2491730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 2644793 - 2644761
Alignment:
Q  1 ttagaaagtttaagttattgcctccattggaaa 33  Q
    ||||||||||||||||||||||||| |||||||    
T  2644793 ttagaaagtttaagttattgcctcctttggaaa 2644761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University