View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20954_low_90 (Length: 255)
Name: NF20954_low_90
Description: NF20954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20954_low_90 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 17 - 255
Target Start/End: Complemental strand, 23537950 - 23537712
Alignment:
| Q |
17 |
aagaacacgaaatacaacagattcaagactccgaatgcagcgatagtgtagtaataatgctcaagcctattcttattcaaatcattacctcctaaccatt |
116 |
Q |
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| T |
23537950 |
aagaacacgaaatacaacagattcaagactccgaatgcagcgatagtgtagtaataatggtcaagcctattcttattcaaatcattacctcctaaccaat |
23537851 |
T |
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| Q |
117 |
gtggtccaccatttccttttgttaaagccacaataatctttataagaagattgctcaaccaacttgcaatgcttaagcttagaaaaaacacagcaccgcc |
216 |
Q |
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| T |
23537850 |
gtggtccaccattcccttttgttaaagccacaataatctttataagaacattgctcgaccaacttgcaatgcttaagcttagaaaaaacacggcaccgcc |
23537751 |
T |
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| Q |
217 |
taatgtcttcatactgtcaggccaatatgatgtcaataa |
255 |
Q |
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| T |
23537750 |
caatgtcttcatactgtcaggccaatatgatgtcaataa |
23537712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 17 - 246
Target Start/End: Complemental strand, 23544078 - 23543849
Alignment:
| Q |
17 |
aagaacacgaaatacaacagattcaagactccgaatgcagcgatagtgtagtaataatgctcaagcctattcttattcaaatcattacctcctaaccatt |
116 |
Q |
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||||||| |||||||||| |||||| |||| | |||| ||||| |||||||||| |||||||||||||||||||||||||||||| |||||||| |
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| T |
23544078 |
aagaacaaaaaatacaacaaattcaaccctccaagaacagcaatagtatagtaataatactcaagcctattcttattcaaatcattaccacctaaccaag |
23543979 |
T |
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| Q |
117 |
gtggtccaccatttccttttgttaaagccacaataatctttataagaagattgctcaaccaacttgcaatgcttaagcttagaaaaaacacagcaccgcc |
216 |
Q |
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| T |
23543978 |
gtgttccaccattcctctttgtcacaaccacaataatctttataagaacattgctcaatgaacttgcaatagataaacttagaaaaaacactgcaccacc |
23543879 |
T |
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| Q |
217 |
taatgtcttcatactgtcaggccaatatga |
246 |
Q |
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| T |
23543878 |
taatgttttcatactttcaggccaatatga |
23543849 |
T |
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