View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20955_high_2 (Length: 308)
Name: NF20955_high_2
Description: NF20955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20955_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 16 - 298
Target Start/End: Original strand, 4063620 - 4063902
Alignment:
| Q |
16 |
attaggtcctatagtgatttttcctatgcacaaactcaaacgggtcctaataataaggacttgaagttgaagaaagggaaaagcatttcatcaaggtctt |
115 |
Q |
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| T |
4063620 |
attaggtcctatagtgatttttcctatgcacaaactcaaaggggtcctaataataaggacttgaagttgaagaaagggaaaagcatttcatcaaggtctt |
4063719 |
T |
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| Q |
116 |
caatttccaagtcatggagctttggtgatgatcctgaatttcaaagaaagaaaagggttgctagctacaaaatgtattctgtggaaggaaaagtgaaagg |
215 |
Q |
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| T |
4063720 |
caatttccaagtcatggagctttggtgatgatcctgaatttcaaagaaagaaaagggttgctagctacaaaatgtattctgtggaaggaaaagtgaaagg |
4063819 |
T |
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| Q |
216 |
ttcatttaggaaaagctttaagtggctaaagaataggtattggcatgtggtttatagcttgtggtgattttgtggttcctttg |
298 |
Q |
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| T |
4063820 |
ttcatttaggaaaagctttaagtggctaaagaataggtattggcatgtggtttatagcttgtggtgattttgtggttcctttg |
4063902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 69 - 215
Target Start/End: Complemental strand, 48217358 - 48217215
Alignment:
| Q |
69 |
taaggacttgaagttgaagaaagggaaaagcatttcatcaaggtcttcaatttccaagtcatggagctttggtgatgatcctgaatttcaaagaaagaaa |
168 |
Q |
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|||||| ||||||||||||||||| |||||| ||||||| | ||||| |||| ||||| | ||| || || |||||||||| |||| || ||||| |
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| T |
48217358 |
taaggatttgaagttgaagaaaggtaaaagcttttcatctggctcttctttttcaaagtctttgagttt--gtc-tgatcctgaacttcagaggaagaag |
48217262 |
T |
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| Q |
169 |
agggttgctagctacaaaatgtattctgtggaaggaaaagtgaaagg |
215 |
Q |
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| T |
48217261 |
agggttgctagctataaaatgtattctgttgaaggtaaagtcaaagg |
48217215 |
T |
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