View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20955_low_1 (Length: 919)
Name: NF20955_low_1
Description: NF20955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20955_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 309; Significance: 1e-173; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 309; E-Value: 1e-173
Query Start/End: Original strand, 534 - 916
Target Start/End: Complemental strand, 32725161 - 32724772
Alignment:
| Q |
534 |
aaccgttgttgctgctacaatctataaaagggataaaccaacaaaataaatgtgagtacctttaaattcataacnnnnnnnnnn--ggaacatctatgca |
631 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |
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| T |
32725161 |
aaccgttgttgctgctacaatctataaaagggataaaccaacaaaataaatgtgagtacctttaaattcataacaaaaaaaaaaaaggaacaactatgca |
32725062 |
T |
|
| Q |
632 |
attacaataggggcatttaataaaagagcattttgaagtatcaatcctcaaaacaaatgacaatgtgtctaatgaaaatcatgctgtccgcataaaccag |
731 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32725061 |
attacaataggggcatttaataaaagagcattttgaagtatcaatcctcaaaacaaatgacaatgtgtctaatgaaaatcatgctgtccgcataaaccag |
32724962 |
T |
|
| Q |
732 |
taatacgtccaaaaaatactcatcaatttgaacatggaaatagattgaaaactggcaacattagttgaattgttacaaattcactagctgctcctagata |
831 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |
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| T |
32724961 |
taatacgtgcaaaaaatactcatcaatttgaacatggaaatagattgaaaactggcaacattagttcaattgttacaaattcaacagctgctcctagata |
32724862 |
T |
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| Q |
832 |
caataaaacctagacctatattacatagaacatacactagtgaaa-----tgaacactcaaaataataaattaagttgctttttcatctc |
916 |
Q |
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| T |
32724861 |
caataaaacctagacctatattacatagaacatacactagtgaaatgaaatgaacactcaaaataataaattaagttgctttttcatctc |
32724772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 132 - 354
Target Start/End: Complemental strand, 32726065 - 32725843
Alignment:
| Q |
132 |
atttatgactgttgagtcttccaagtgacatgcatcgcctcactacccttgaatacttggagggttgtccggaaaatgttaacctcagtcaggtatgatt |
231 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
32726065 |
atttttgactgttgagtcttccaagtgacatgcatcgcctcactacccttgaatacttggagggttgtccggaaaatgttaaccacagtcaggtatgatt |
32725966 |
T |
|
| Q |
232 |
gctcagcattcaagtagttgatggctttggagaagatgaatgaatggcatgccagcagcaagaggttttagattctcaaagtgtttgtatctgtatgttt |
331 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
32725965 |
gctcagcattcaagtagttgatggctttggagaagatgaacgaatgccatgccagcagcaagaggttttagattctcaaaatgtttgtatctgtatgttt |
32725866 |
T |
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| Q |
332 |
gatgaagccaaagaattggaagt |
354 |
Q |
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| T |
32725865 |
gatgaagccaaagaattggaagt |
32725843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 32 - 137
Target Start/End: Complemental strand, 32726237 - 32726132
Alignment:
| Q |
32 |
tttatttttcctaaattacaggatttgataatttcagactgtgagatgataaacctatcattatacaataaaagaccaatccaaagattgatgatgaaac |
131 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
32726237 |
tttatttttcctaaattacaggatctgataatttcagactgtcagatgataaacctatcattgtacaataaaagaccaatccaaagattgatgatgaaac |
32726138 |
T |
|
| Q |
132 |
atttat |
137 |
Q |
| |
|
|||||| |
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|
| T |
32726137 |
atttat |
32726132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 388 - 460
Target Start/End: Complemental strand, 32725793 - 32725721
Alignment:
| Q |
388 |
taaagtatttgttttataagccagtactcatcatttaaccttttaagtcactgcctttgtggagcatgaattc |
460 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |
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| T |
32725793 |
taaagtatttgttttataagccagtactcatcatttaactttttaagtcactgcctttatggagcatgaattc |
32725721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 184
Target Start/End: Complemental strand, 35945174 - 35945128
Alignment:
| Q |
138 |
gactgttgagtcttccaagtgacatgcatcgcctcactacccttgaa |
184 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
35945174 |
gactgttgagtcttccaagtgacatgcatcgcctcaccgcccttgaa |
35945128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 184
Target Start/End: Complemental strand, 35956380 - 35956335
Alignment:
| Q |
139 |
actgttgagtcttccaagtgacatgcatcgcctcactacccttgaa |
184 |
Q |
| |
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||||||||||||||||||| |||||||||||||||| |||||||| |
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| T |
35956380 |
actgttgagtcttccaagtaacatgcatcgcctcaccgcccttgaa |
35956335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 184
Target Start/End: Complemental strand, 35975835 - 35975790
Alignment:
| Q |
139 |
actgttgagtcttccaagtgacatgcatcgcctcactacccttgaa |
184 |
Q |
| |
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||||||||||||||||||||| |||||||||||||| |||||||| |
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| T |
35975835 |
actgttgagtcttccaagtgatatgcatcgcctcaccgcccttgaa |
35975790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 184
Target Start/End: Complemental strand, 35997247 - 35997202
Alignment:
| Q |
139 |
actgttgagtcttccaagtgacatgcatcgcctcactacccttgaa |
184 |
Q |
| |
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||||||||||||||||||||| |||||||||||||| |||||||| |
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| T |
35997247 |
actgttgagtcttccaagtgatatgcatcgcctcaccgcccttgaa |
35997202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 180
Target Start/End: Complemental strand, 18132481 - 18132442
Alignment:
| Q |
141 |
tgttgagtcttccaagtgacatgcatcgcctcactaccct |
180 |
Q |
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| T |
18132481 |
tgttgagtcttccaagtggcatgcatcgtctcactaccct |
18132442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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