View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20955_low_2 (Length: 554)
Name: NF20955_low_2
Description: NF20955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20955_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 469; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 16 - 544
Target Start/End: Complemental strand, 39779131 - 39778602
Alignment:
| Q |
16 |
atcatcaattaaatatgaagtacaatcaattttcctttttgtgaatgtttgaaaaagaaagtgtgatctccttgactttgcttatattctaaacacacaa |
115 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||| |
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| T |
39779131 |
atcatcaattaaatttgaagtacaatcaattttcctttttgtgaatgtttaaaaaagaaagtgtgatctccttgactttgcttatagtccaaacacacaa |
39779032 |
T |
|
| Q |
116 |
attcctttatgaatctttcaaaccatgcccaatggctccactttagtccatataagatcttc-tccaaccaataatannnnnnnggtagtgtcttcaacc |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||| |
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| T |
39779031 |
attcctttatgaatctttcaaaccatgcccaatggctccactttagtccatataagatcttcattcaaccaataatatttttttggtagtgtcttcaacc |
39778932 |
T |
|
| Q |
215 |
aataatctaccactatgtttaatcactctttaacaactttattagtaactttattaagttacttgaaactggaaaatagaactagaaccggaaatctttt |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39778931 |
aataatctaccactatgtttaatcactctttaacaactttattagtaactttattaagttacttgaaactggaaaatagaactagaaccggaaatctttt |
39778832 |
T |
|
| Q |
315 |
ctaactgaaaacctaatcgcttactatatttgtaatttgaaatcgccactctaattcaactctattccaaccctaaaccacttctctccgatcccaaacc |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
39778831 |
ctaactgaaaacctaatcgcttactatatttgtaatttgaaatcgccactctttttcaactctattccaaccctaaaacacttctctccgatcccaaacc |
39778732 |
T |
|
| Q |
415 |
cttaacaacaatgcttcccctcacactctctttcaaccaggaccaaacctgcttctccgcctcaacacctacaggcttccgtgtcttcagctgcgaccct |
514 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39778731 |
cttaacaacaatgcttcccctcacactctctttcaaccaggaccaaacctgcttctccgcctcaacacctacaggcttccgtgtcttcagctgcgaccct |
39778632 |
T |
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| Q |
515 |
ctccgccacctcttccgccgaatattcccc |
544 |
Q |
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| T |
39778631 |
ctccgccacctcttccgccgaatattcccc |
39778602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 115
Target Start/End: Original strand, 6382622 - 6382701
Alignment:
| Q |
36 |
tacaatcaattttcctttttgtgaatgtttgaaaaagaaagtgtgatctccttgactttgcttatattctaaacacacaa |
115 |
Q |
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|||||| | ||||||| ||||||||| ||||| || | | |||||| |||||||||||||||||| |||||||||||| |
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| T |
6382622 |
tacaattagttttcctccttgtgaatgcttgaagaaaagattgtgatttccttgactttgcttatagcctaaacacacaa |
6382701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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