View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20955_low_3 (Length: 501)
Name: NF20955_low_3
Description: NF20955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20955_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 105 - 483
Target Start/End: Original strand, 7645640 - 7646015
Alignment:
| Q |
105 |
tctaactgcaaatacatgtgtttattgcataaaccactacacacaagaaaaacctaagcatttgcgctgctctggtgcctagctttttccttctctttca |
204 |
Q |
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| T |
7645640 |
tctaactgcaaatacatgtgtttattgcataaaccactacacacaagaaaaacctaagcattggcgctgctctggtgcctagctttttccttctctttca |
7645739 |
T |
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| Q |
205 |
cctcgcttccctgtgtcttgtcataatcttcatgcacaaaaacaaacaagtctgaattaggcttaataattaatttccatcatgacctctacaaaagtaa |
304 |
Q |
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| T |
7645740 |
cctcgcttccctgtgtcttgtcataatcttcatgcacaaaaacaaacaagtcttaattaggcttaataattaatttc---catgacctctacaaaagtaa |
7645836 |
T |
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| Q |
305 |
taagaaattgacggtgtaaaatgttttaaacgtaaggnnnnnnnctagttgtccatgtatgatcataagcaaattaactaattataacctgggtgatttt |
404 |
Q |
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| T |
7645837 |
taagaaaatgacggtgtaaaatgttttaaacgtaaggaaaaaaactagttgtccatgtatgatcataagcaaattaactaattataacctgggtgatttt |
7645936 |
T |
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| Q |
405 |
catggacggacttatctttctgaagggattggtttccactatatatccctccaaatccttcttcatcagacctcgtagc |
483 |
Q |
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| T |
7645937 |
catggacggacttatctttctgaagggattggtttccaccatatatccctccaaatccttcttcatcagaccttgtagc |
7646015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 10 - 48
Target Start/End: Original strand, 7645545 - 7645583
Alignment:
| Q |
10 |
ataatacttatacataattgtccatattatcactctgag |
48 |
Q |
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| T |
7645545 |
ataatacttatacataattgtccatattatcactctgag |
7645583 |
T |
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