View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20955_low_4 (Length: 341)
Name: NF20955_low_4
Description: NF20955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20955_low_4 |
 | |
|
| [»] scaffold1064 (2 HSPs) |
| |
|
| [»] scaffold0038 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 32 - 327
Target Start/End: Original strand, 9238327 - 9238624
Alignment:
| Q |
32 |
tgaatgttcacaacaccaagttttttcctcaaaaattcaaatatgtcaagcttcaaagtctt-gtaaagccatctgcaagctgcaattatgtaggacaat |
130 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9238327 |
tgaatgttcacaacaccaagttttttcctcaaaaattcaaatatgtcaagcttcaaagtctttgtaaagccatctgcaagctgcaattatgtaggacaat |
9238426 |
T |
|
| Q |
131 |
actgcaactcaatcataccattagtcacttgcttccaaatgaaacgcaatctagtctcaatatgtttgcttctaccatgagagatggggttcttggcaag |
230 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
9238427 |
actgcaactcaatcataccattagtcacctgcttccaaatgaaacgaaatctagtctcaatatgtttgcttctaccatgagagatgggattcttgacaag |
9238526 |
T |
|
| Q |
231 |
gcttatggctgacttgttgtcaattctcagtgtt-agaggcttcatcacttcacacttaagctctttcattgctgaatccaaccacaaagcttgacat |
327 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
9238527 |
acttatggctgacttgttgtcaattctcagtgttaagaggcttcatcacttcacacttaatctctttcattgatgaatccaaccacaaagcttgacat |
9238624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 41 - 336
Target Start/End: Complemental strand, 26905229 - 26904938
Alignment:
| Q |
41 |
acaacaccaagttttttcctcaaaaattcaaatatgtcaagcttcaaagtctt-gtaaagccatctgcaagctgcaattatgtaggacaatactgcaact |
139 |
Q |
| |
|
|||||||||||||| ||||| ||||||| |||| ||||||||||||||| ||| ||||||||| ||||||||||| || | |||||||||| || | || |
|
|
| T |
26905229 |
acaacaccaagtttcttccttaaaaatttaaatttgtcaagcttcaaagcctttgtaaagccacatgcaagctgcagttctataggacaataatgtagct |
26905130 |
T |
|
| Q |
140 |
caatcataccattagtcacttgcttccaaatgaaacgcaatctagtctcaatatgtttgcttctaccatgagagatggggttcttggcaaggcttatggc |
239 |
Q |
| |
|
||||||| ||||| ||| |||| || |||||| | |||||||||||||| ||||||||| |||||||||| || |||||||| ||||| |||||||| |
|
|
| T |
26905129 |
caatcatttcattattcatctgctccccaatgaagtggaatctagtctcaatgtgtttgcttataccatgagaaatagggttcttagcaagacttatggc |
26905030 |
T |
|
| Q |
240 |
tgacttgttgtcaattctcagtgttagaggcttcatcacttcacacttaagctctttcattgctgaatccaaccacaaagcttgacatgtagcaaat |
336 |
Q |
| |
|
||| ||||||||||| ||||||||||||| |||| ||| ||||| | ||||||||| ||||||||||||| | |||||||||||| ||||| |
|
|
| T |
26905029 |
tgatttgttgtcaatcttcagtgttagaggtttca----ttcgcacttgatctctttcatcactgaatccaacca-atggcttgacatgtatcaaat |
26904938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 56 - 338
Target Start/End: Complemental strand, 5707055 - 5706772
Alignment:
| Q |
56 |
ttcctcaaaaattcaaatatgtcaagcttcaaagtctt-gtaaagccatctgcaagctgcaattatgtaggacaatactgcaactcaatcataccattag |
154 |
Q |
| |
|
||||||| |||||||||| |||||||||||| | || ||||||||||| ||||| || | || ||| || || || |||| ||||||||| ||||||| |
|
|
| T |
5707055 |
ttcctcacaaattcaaatttgtcaagcttcactgcatttgtaaagccatcggcaagttgtagttctgtggggcagtagtgcagctcaatcattccattag |
5706956 |
T |
|
| Q |
155 |
tcacttgcttccaaatgaaacgcaatctagtctcaatatgtttgcttctaccatgagagatggggttcttggcaaggcttatggctgacttgttgtcaat |
254 |
Q |
| |
|
||||||||| || ||||||| | ||||| ||||| | ||||| ||||| |||||||||| || |||| ||||| ||||||| ||| ||||||||||| |
|
|
| T |
5706955 |
tcacttgctccctaatgaaatggaatctggtctctaagtgtttacttctgccatgagagacaggactcttagcaagacttatggatgatttgttgtcaat |
5706856 |
T |
|
| Q |
255 |
tctcagtgttagaggcttcatcacttcacacttaagctctttcattgctgaatccaaccacaaagcttgacatgtagcaaatgt |
338 |
Q |
| |
|
||||||| |||||||| |||||||||||||| ||||||||||| ||||||||| ||| || |||||||| ||||||||||| |
|
|
| T |
5706855 |
cttcagtgtcagaggctttatcacttcacacttgagctctttcatcactgaatccagccataatgcttgacaagtagcaaatgt |
5706772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 43 - 338
Target Start/End: Complemental strand, 9881190 - 9880890
Alignment:
| Q |
43 |
aacaccaagttttttcctcaaaaattcaaatat-gtcaagcttcaaa-gtctt-gtaaagccatctgcaagctgcaattatgtaggacaatactgcaact |
139 |
Q |
| |
|
|||||||||||| |||||||||||||||||| | |||||| || | | ||| ||||| ||||||||||| ||||| | || |||||||| |||| || |
|
|
| T |
9881190 |
aacaccaagtttcttcctcaaaaattcaaattttgtcaagtttttactgccttagtaaaaccatctgcaagttgcaactcagtgggacaatattgcacct |
9881091 |
T |
|
| Q |
140 |
caatcataccattagtcacttgcttccaaatgaaacgcaatct-agtctcaatatgtttgcttctaccatgagagatggggttcttggcaaggcttatgg |
238 |
Q |
| |
|
|| |||| |||||||||| |||| || ||| ||| | ||| | |||||| || || |||||||||||||| |||||||| ||||| ||||| ||||||| |
|
|
| T |
9881090 |
cattcattccattagtcatctgctccctaataaaatggaattttagtctctatgtgcttgcttctaccatgtgagatgggattcttagcaagacttatgg |
9880991 |
T |
|
| Q |
239 |
ctgactt-gttgtcaattctcagtgttagaggcttcatcacttcacacttaagctctttcattgctgaatccaaccacaaagcttgacatgtagcaaatg |
337 |
Q |
| |
|
|| || |||||||||| | || ||||||||||||| | |||||| |||||||||||||| ||||||| |||||||||| |||||| |||| ||||| |
|
|
| T |
9880990 |
tagattttgttgtcaattatgagggttagaggcttcacaatttcacatttaagctctttcatcactgaatctaaccacaaagtttgacaagtagaaaatg |
9880891 |
T |
|
| Q |
338 |
t |
338 |
Q |
| |
|
| |
|
|
| T |
9880890 |
t |
9880890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 143; Significance: 4e-75; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 32 - 337
Target Start/End: Original strand, 38099383 - 38099689
Alignment:
| Q |
32 |
tgaatgttcacaacaccaagttttttcctcaaaaattcaaatatgtcaagcttcaaagtctt-gtaaagccatctgcaagctgcaattatgtaggacaat |
130 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||| ||| |||||||||| ||| |||| ||||| ||||||||||| |
|
|
| T |
38099383 |
tgaatgttaacaacaccaagtttcttcctcaaaaattcaaatatgccaagcttcaaagcctttgtaaagccatatgctagctacaattctgtaggacaat |
38099482 |
T |
|
| Q |
131 |
actgcaactcaatcataccattagtcacttgcttccaaatgaaacgcaatctagtctcaatatgtttgcttctaccatgagagatggggttcttggcaag |
230 |
Q |
| |
|
| || | ||||||||||||||||||||| ||| || ||||||| | |||||||||||||| |||||| ||||||||||||| || || ||| | ||||| |
|
|
| T |
38099483 |
attgtagttcaatcataccattagtcactcgctccctaatgaaatggaatctagtctcaatgtgtttgattctaccatgagaaataggattcctagcaag |
38099582 |
T |
|
| Q |
231 |
gcttatggctgacttgttgtcaattctcagtgttagaggcttcatcacttcacacttaagctctttcattgctgaatccaaccacaaagcttgacatgta |
330 |
Q |
| |
|
||||||| ||| ||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||| |||||||| | ||| |||||||||| | |
|
|
| T |
38099583 |
acttatggttgatttgttgtcaatcttcagtgttagaggtttcatcacttcacacttgagctctttcatcattgaatccagcaacagagcttgacatatt |
38099682 |
T |
|
| Q |
331 |
gcaaatg |
337 |
Q |
| |
|
||||||| |
|
|
| T |
38099683 |
gcaaatg |
38099689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 43 - 338
Target Start/End: Complemental strand, 302237 - 301941
Alignment:
| Q |
43 |
aacaccaagttttttcctcaaaaattcaaatatgtcaagcttcaaag-tcttgtaaagccatctgcaagctgcaattatgtaggacaatactgcaactca |
141 |
Q |
| |
|
|||||| | ||| |||||||| ||||||||| |||||||||||| | | ||||||| ||||| ||||| || | || ||| || || || |||| |||| |
|
|
| T |
302237 |
aacacctaatttcttcctcaagaattcaaatctgtcaagcttcattgcttttgtaaaaccatcagcaagttgtagttttgtggggcagtagtgcagctca |
302138 |
T |
|
| Q |
142 |
atcataccattagtcacttgcttccaaatgaaacgcaatctagtctcaatatgtttgcttctaccatgagagatggggttcttggcaaggcttatggctg |
241 |
Q |
| |
|
||||| ||||||||||| |||| ||||||||| ||||| |||||||| ||||| || || ||||| ||||| | ||||| ||||| ||| |||||| |
|
|
| T |
302137 |
atcattccattagtcacctgctctcaaatgaaattgaatctggtctcaatgtgtttactcctgccatgtgagattagattctttgcaagacttgtggctg |
302038 |
T |
|
| Q |
242 |
acttgttgtcaattctcagtgttagaggcttcatcacttcacacttaagctctttcattgctgaatccaaccacaaagcttgacatgtagcaaatgt |
338 |
Q |
| |
|
| |||||||||||| |||||||||||||||||||||||||||||||||| || ||||| |||||| || ||| || |||||||| ||||||||||| |
|
|
| T |
302037 |
atttgttgtcaattttcagtgttagaggcttcatcacttcacacttaagttccttcatcactgaattcagccataatgcttgacaagtagcaaatgt |
301941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 43 - 341
Target Start/End: Complemental strand, 3461684 - 3461385
Alignment:
| Q |
43 |
aacaccaagttttttcctcaaaaattcaaatatgtcaagcttcaaagtc-ttgtaaagccatctgcaagctgcaattatgtaggacaatactgcaactca |
141 |
Q |
| |
|
||||||||||| || ||||| |||||||||||||||||||| | | | ||||||| ||||| ||||| |||| || ||| || ||||| |||| |||| |
|
|
| T |
3461684 |
aacaccaagttcctttctcaagaattcaaatatgtcaagctttactgcctttgtaaaaccatcagcaagttgcagttctgtggggcaatagtgcagctca |
3461585 |
T |
|
| Q |
142 |
atcataccattagtcacttgcttccaaatgaaacgcaatctagtctcaatatgtttgcttctaccatgagagatggggttcttggcaaggcttatggctg |
241 |
Q |
| |
|
||||| ||||||||||| |||| | ||| ||| | ||| | |||||||| ||||| || || ||||| |||| || ||||| |||| |||||||||| |
|
|
| T |
3461584 |
atcattccattagtcacatgctctctaataaaatggaatatggtctcaatgtgtttactcctgccatgtaagattggattctttacaagacttatggctg |
3461485 |
T |
|
| Q |
242 |
acttgttgtcaattctcagtgttagaggcttcatcacttcacacttaagctctttcattgctgaatccaaccacaaagcttgacatgtagcaaatgtacc |
341 |
Q |
| |
|
| || || |||||| ||||||||||||||||||||||||||||||||| || ||||| ||||||||||||| | |||||||| |||||||| ||||| |
|
|
| T |
3461484 |
atttattatcaattttcagtgttagaggcttcatcacttcacacttaaattccttcatcactgaatccaaccatagtgcttgacaagtagcaaaagtacc |
3461385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1064 (Bit Score: 138; Significance: 4e-72; HSPs: 2)
Name: scaffold1064
Description:
Target: scaffold1064; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 192 - 341
Target Start/End: Original strand, 2416 - 2565
Alignment:
| Q |
192 |
atgtttgcttctaccatgagagatggggttcttggcaaggcttatggctgacttgttgtcaattctcagtgttagaggcttcatcacttcacacttaagc |
291 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
2416 |
atgtttgcttctaccatgagagatgggattcttgacaaggcttatggctgacttgttgtcaattctcaatgttagaggcttcatcacttcacacttaagc |
2515 |
T |
|
| Q |
292 |
tctttcattgctgaatccaaccacaaagcttgacatgtagcaaatgtacc |
341 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2516 |
tctttcattgctgaatccaaccacaaagcttgacatgtagcaaatgtacc |
2565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1064; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 34 - 146
Target Start/End: Original strand, 2304 - 2417
Alignment:
| Q |
34 |
aatgttcacaacaccaagttttttcctcaaaaattcaaatatgtcaagcttcaaagtctt-gtaaagccatctgcaagctgcaattatgtaggacaatac |
132 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2304 |
aatgttcacaacaccaagttttttcctcaaaaattaaaatatttcaagcttcaaagtctttgtaaagccatctgcaagctgcaattatgtaggacaatac |
2403 |
T |
|
| Q |
133 |
tgcaactcaatcat |
146 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
2404 |
tgcaactcaatcat |
2417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 43 - 338
Target Start/End: Complemental strand, 14234014 - 14233718
Alignment:
| Q |
43 |
aacaccaagttttttcctcaaaaattcaaatatgtcaagcttcaaagtctt-gtaaagccatctgcaagctgcaattatgtaggacaatactgcaactca |
141 |
Q |
| |
|
|||||||||||| ||||| |||||||||||| ||||||| || | | ||| ||||| ||||||||||| |||| | || |||||||| |||| |||| |
|
|
| T |
14234014 |
aacaccaagtttcttcctaaaaaattcaaatctgtcaagttttactgccttagtaaaaccatctgcaagttgcagctcagtgggacaatattgcacctca |
14233915 |
T |
|
| Q |
142 |
atcataccattagtcacttgcttccaaatgaaacgcaatctagtctcaatatgtttgcttctaccatgagagatggggttcttggcaaggcttatggctg |
241 |
Q |
| |
|
||||| ||||||||||| |||| || ||||||| | ||||| |||||||| || |||||||||||||| ||||| || ||||| ||||||||||||| | |
|
|
| T |
14233914 |
atcattccattagtcacctgctccctaatgaaatggaatctggtctcaatgtgcttgcttctaccatgtgagataggattcttagcaaggcttatggaag |
14233815 |
T |
|
| Q |
242 |
acttgttgtcaattctcagtgttagaggcttcatcacttcacacttaagctctttcattgctgaatccaaccacaaagcttgacatgtagcaaatgt |
338 |
Q |
| |
|
| |||||||||||||| || ||||||||||||| |||||||| |||||||| ||||| ||||||| ||||||| ||||||||| ||||||||||| |
|
|
| T |
14233814 |
atttgttgtcaattctgagggttagaggcttcactacttcacatttaagctccttcatcactgaatctaaccacatagcttgacaagtagcaaatgt |
14233718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 43 - 338
Target Start/End: Original strand, 37786858 - 37787154
Alignment:
| Q |
43 |
aacaccaagttttttcctcaaaaattcaaatatgtcaagcttcaaag-tcttgtaaagccatctgcaagctgcaattatgtaggacaatactgcaactca |
141 |
Q |
| |
|
|||||| | ||| |||||||| ||||||||| |||||||||||| | | ||||||| ||||| ||||| || | || ||| || || || |||| |||| |
|
|
| T |
37786858 |
aacacctaatttattcctcaagaattcaaatctgtcaagcttcactgcttttgtaaaaccatcagcaagttgtagttctgtggggcagtagtgcagctca |
37786957 |
T |
|
| Q |
142 |
atcataccattagtcacttgcttccaaatgaaacgcaatctagtctcaatatgtttgcttctaccatgagagatggggttcttggcaaggcttatggctg |
241 |
Q |
| |
|
||||| |||||||||||||||| | ||||||| | ||| | |||||||| ||||| ||||| ||||| ||||| || ||||| ||||| |||||||||| |
|
|
| T |
37786958 |
atcattccattagtcacttgctctctaatgaaatggaatatggtctcaatgtgtttacttctgccatgtgagattggattctttgcaagacttatggctg |
37787057 |
T |
|
| Q |
242 |
acttgttgtcaattctcagtgttagaggcttcatcacttcacacttaagctctttcattgctgaatccaaccacaaagcttgacatgtagcaaatgt |
338 |
Q |
| |
|
| |||||||||||| |||||||||||||||||||||||||||||||||| || ||||| |||||| || ||| || |||||||| ||||||||||| |
|
|
| T |
37787058 |
atttgttgtcaattttcagtgttagaggcttcatcacttcacacttaagttccttcatcactgaattcagccataatgcttgacaagtagcaaatgt |
37787154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 32 - 224
Target Start/End: Complemental strand, 6414512 - 6414319
Alignment:
| Q |
32 |
tgaatgttcacaacaccaagttttttcctcaaaaattcaaatatgtcaagcttcaaagtctt-gtaaagccatctgcaagctgcaattatgtaggacaat |
130 |
Q |
| |
|
|||||||| |||||| ||||||| |||||||||| || |||| | ||||||||||||| ||| ||||| ||||||||||||||||||| ||||||||| | |
|
|
| T |
6414512 |
tgaatgttaacaacaacaagtttcttcctcaaaagtttaaatctatcaagcttcaaagcctttgtaaaaccatctgcaagctgcaattctgtaggacagt |
6414413 |
T |
|
| Q |
131 |
actgcaactcaatcataccattagtcacttgcttccaaatgaaacgcaatctagtctcaatatgtttgcttctaccatgagagatggggttctt |
224 |
Q |
| |
|
| ||||||||||||| ||||||||||| |||| || ||||||| ||||||||| |||| |||||||||| |||||||||||||| ||||| |
|
|
| T |
6414412 |
aatgcaactcaatcactccattagtcacctgctccctaatgaaatagaatctagtcccaatgtgtttgcttccgccatgagagatgggattctt |
6414319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 98; Significance: 3e-48; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 43 - 335
Target Start/End: Complemental strand, 30380550 - 30380258
Alignment:
| Q |
43 |
aacaccaagttttttcctcaaaaattcaaatatgtcaagcttcaaag-tcttgtaaagccatctgcaagctgcaattatgtaggacaatactgcaactca |
141 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||| | | ||||||| |||| |||||| |||| || ||| | | | || || | |||| |
|
|
| T |
30380550 |
aacaccaagttttttcctcaaaaattaaaatatgtcaagcttcactgcttttgtaaa-ccatatgcaagttgcagttctgttgtatagtagtgtagctca |
30380452 |
T |
|
| Q |
142 |
atcataccattagtcacttgcttccaaatgaaacgcaatctagtctcaatatgtttgcttctaccatgagagatggggttcttggcaaggcttatggctg |
241 |
Q |
| |
|
||||| ||||||||||| |||| | ||||||| | ||||| |||||||| ||||| ||| | ||||| ||||| || |||| ||||| |||||||||| |
|
|
| T |
30380451 |
atcattccattagtcacctgctctctaatgaaatggaatctggtctcaatgtgtttacttttgccatgtgagattggattctaagcaagacttatggctg |
30380352 |
T |
|
| Q |
242 |
acttgttgtcaattctcagtgttagaggcttcatcacttcacacttaagctctttcattgctgaatccaaccacaaagcttgacatgtagcaaa |
335 |
Q |
| |
|
| ||||||||||| |||||||||||| ||||||||||||||||| ||||||||||| |||||||||| || | ||||||||| |||||||| |
|
|
| T |
30380351 |
atttgttgtcaatctccagtgttagaggtttcatcacttcacacttgagctctttcatcactgaatccaatcatagagcttgacaagtagcaaa |
30380258 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 43 - 338
Target Start/End: Complemental strand, 296972 - 296676
Alignment:
| Q |
43 |
aacaccaagttttttcctcaaaaattcaaatatgtcaagcttcaaag-tcttgtaaagccatctgcaagctgcaattatgtaggacaatactgcaactca |
141 |
Q |
| |
|
|||||| | ||| |||||||| ||||||||| ||||||||||| | | ||||||| ||||| |||| || | || ||| || || || |||||||| |
|
|
| T |
296972 |
aacacctaatttcttcctcaagaattcaaatgtgtcaagcttcgctgcttttgtaaaaccatcaacaagttgtagttctgtggggcagtagtgcaactct |
296873 |
T |
|
| Q |
142 |
atcataccattagtcacttgcttccaaatgaaacgcaatctagtctcaatatgtttgcttctaccatgagagatggggttcttggcaaggcttatggctg |
241 |
Q |
| |
|
||||| ||||||||||| |||| || ||||||| | ||||| |||||||| ||||| ||| | |||||||||| ||| ||||| ||||| |||||||||| |
|
|
| T |
296872 |
atcattccattagtcacctgctccctaatgaaatggaatctggtctcaatgtgtttacttttgccatgagagacgggattcttagcaagacttatggctg |
296773 |
T |
|
| Q |
242 |
acttgttgtcaattctcagtgttagaggcttcatcacttcacacttaagctctttcattgctgaatccaaccacaaagcttgacatgtagcaaatgt |
338 |
Q |
| |
|
| ||||||||||| ||||||| ||||||||||||||||||||||| |||||||| || ||||||||| ||| | |||||| | ||||||||||| |
|
|
| T |
296772 |
atttgttgtcaatcttcagtgtcagaggcttcatcacttcacacttgagctcttttatcactgaatccagccatagtgcttgaaaagtagcaaatgt |
296676 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 56 - 338
Target Start/End: Original strand, 18641218 - 18641501
Alignment:
| Q |
56 |
ttcctcaaaaattcaaatatgtcaagcttcaaagtctt-gtaaagccatctgcaagctgcaattatgtaggacaatactgcaactcaatcataccattag |
154 |
Q |
| |
|
||||||| |||||||||| |||||||||||| | || ||||||||||| ||||| || | || ||| || || || |||| ||||||||| ||||||| |
|
|
| T |
18641218 |
ttcctcacaaattcaaatttgtcaagcttcactgcatttgtaaagccatcggcaagttgtagttctgtggggcagtagtgcagctcaatcattccattag |
18641317 |
T |
|
| Q |
155 |
tcacttgcttccaaatgaaacgcaatctagtctcaatatgtttgcttctaccatgagagatggggttcttggcaaggcttatggctgacttgttgtcaat |
254 |
Q |
| |
|
||||||||| || ||||||| | ||||| ||||| | ||||| ||||| |||||||||| || |||| ||||| ||||||| ||| ||||||||||| |
|
|
| T |
18641318 |
tcacttgctccctaatgaaatggaatctggtctctaagtgtttacttctgccatgagagacaggactcttagcaagacttatggatgatttgttgtcaat |
18641417 |
T |
|
| Q |
255 |
tctcagtgttagaggcttcatcacttcacacttaagctctttcattgctgaatccaaccacaaagcttgacatgtagcaaatgt |
338 |
Q |
| |
|
||||||| |||||||| |||||||||||||| ||||||||||| ||||||||| ||| || |||||||| ||||||||||| |
|
|
| T |
18641418 |
cttcagtgtcagaggctttatcacttcacacttgagctctttcatcactgaatccagccataatgcttgacaagtagcaaatgt |
18641501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 241 - 338
Target Start/End: Complemental strand, 34983048 - 34982951
Alignment:
| Q |
241 |
gacttgttgtcaattctcagtgttagaggcttcatcacttcacacttaagctctttcattgctgaatccaaccacaaagcttgacatgtagcaaatgt |
338 |
Q |
| |
|
||||| |||||||| || ||||||||||||||| |||||||||||| ||||||||||| ||| | |||||||| ||| ||||||| ||||||||||| |
|
|
| T |
34983048 |
gacttattgtcaatcatctgtgttagaggcttcaccacttcacacttgagctctttcatcgctaattccaaccataaaacttgacaagtagcaaatgt |
34982951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 43 - 279
Target Start/End: Original strand, 50778361 - 50778598
Alignment:
| Q |
43 |
aacaccaagttttttcctcaaaaattcaaatatgtcaagcttcaaagtc-ttgtaaagccatctgcaagctgcaattatgtaggacaatactgcaactca |
141 |
Q |
| |
|
||||||||||| ||||| |||||||||||| |||||||||| | | | ||||||||||||| ||||| |||| || ||| || ||||| |||| |||| |
|
|
| T |
50778361 |
aacaccaagttccttcctaaaaaattcaaatctgtcaagctttactgcctttgtaaagccatcagcaagttgcagttctgtggggcaatagtgcagctca |
50778460 |
T |
|
| Q |
142 |
atcataccattagtcacttgcttccaaatgaaacgcaatctagtctcaatatgtttgcttctaccatgagagatggggttcttggcaaggcttatggctg |
241 |
Q |
| |
|
||||| | ||||||||| |||| | ||||||| | ||||| |||||||| ||||| || || ||||| ||||| || ||||| ||||| |||||||||| |
|
|
| T |
50778461 |
atcattcaattagtcacctgctctctaatgaaatggaatctggtctcaatgtgtttactcctgccatgtgagattggattctttgcaagacttatggctg |
50778560 |
T |
|
| Q |
242 |
acttgttgtcaattctcagtgttagaggcttcatcact |
279 |
Q |
| |
|
| || || |||||| ||||||||||||||||||||||| |
|
|
| T |
50778561 |
atttattatcaattttcagtgttagaggcttcatcact |
50778598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 43 - 299
Target Start/End: Complemental strand, 49221 - 48964
Alignment:
| Q |
43 |
aacaccaagttttttcctcaaaaattcaaatatgtcaagcttcaaag-tcttgtaaagccatctgcaagctgcaattatgtaggacaatactgcaactca |
141 |
Q |
| |
|
|||||| | ||| |||||||| ||||||||| |||||||||||| | | ||||||| ||||| ||||| || | || ||| || || || ||||||||| |
|
|
| T |
49221 |
aacacctaatttcttcctcaagaattcaaatttgtcaagcttcactgcttttgtaaaaccatcagcaagttgtagttctgtggggcagtagtgcaactca |
49122 |
T |
|
| Q |
142 |
atcataccattagtcacttgcttccaaatgaaacgcaatctagtctcaatatgtttgcttctaccatgagagatggggttcttggcaaggcttatggctg |
241 |
Q |
| |
|
||||| ||||||||||| |||| | ||||||| | ||||| ||| ||| ||||| ||||| |||||||||| ||||| ||||| |||||| ||| |
|
|
| T |
49121 |
atcattccattagtcacatgctctctaatgaaatggaatctggtcgaaatgtgtttacttctgccatgagagacaatattcttagcaagacttatgcctg |
49022 |
T |
|
| Q |
242 |
acttgttgtcaattctcagtgttagaggcttcatcacttcacacttaagctctttcat |
299 |
Q |
| |
|
| ||||||||||| ||||||| |||||||| | |||||||||||| ||||||||||| |
|
|
| T |
49021 |
atttgttgtcaatcttcagtgtcagaggctttaccacttcacacttgagctctttcat |
48964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 66; Significance: 4e-29; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 43 - 299
Target Start/End: Complemental strand, 28249059 - 28248802
Alignment:
| Q |
43 |
aacaccaagttttttcctcaaaaattcaaatatgtcaagcttcaaag-tcttgtaaagccatctgcaagctgcaattatgtaggacaatactgcaactca |
141 |
Q |
| |
|
|||||| | ||| |||||||| ||||||||| |||||||||||| | | ||||||| ||||| ||||| || | || ||| || || || ||||||||| |
|
|
| T |
28249059 |
aacacctaatttcttcctcaagaattcaaatttgtcaagcttcactgcttttgtaaaaccatcagcaagttgtagttctgtggggcagtagtgcaactca |
28248960 |
T |
|
| Q |
142 |
atcataccattagtcacttgcttccaaatgaaacgcaatctagtctcaatatgtttgcttctaccatgagagatggggttcttggcaaggcttatggctg |
241 |
Q |
| |
|
||||| ||||||||||| |||| | ||||||| | ||||| ||| ||| ||||| ||||| |||||||||| ||||| ||||| |||||| ||| |
|
|
| T |
28248959 |
atcattccattagtcacatgctctctaatgaaatggaatctggtcgaaatgtgtttacttctgccatgagagacaatattcttagcaagacttatgcctg |
28248860 |
T |
|
| Q |
242 |
acttgttgtcaattctcagtgttagaggcttcatcacttcacacttaagctctttcat |
299 |
Q |
| |
|
| ||||||||||| ||||||| |||||||| | |||||||||||| ||||||||||| |
|
|
| T |
28248859 |
atttgttgtcaatcttcagtgtcagaggctttaccacttcacacttgagctctttcat |
28248802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 277 - 336
Target Start/End: Original strand, 29011197 - 29011256
Alignment:
| Q |
277 |
acttcacacttaagctctttcattgctgaatccaaccacaaagcttgacatgtagcaaat |
336 |
Q |
| |
|
||||||||||| || || ||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
29011197 |
acttcacacttgagttcattcatcactgaatccaaccacaaagcttgacatgtagcaaat |
29011256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 43 - 153
Target Start/End: Original strand, 29011011 - 29011122
Alignment:
| Q |
43 |
aacaccaagttttttcctcaaaaattcaaatatgtcaagcttcaaag-tcttgtaaagccatctgcaagctgcaattatgtaggacaatactgcaactca |
141 |
Q |
| |
|
|||||||||||| ||||| ||||| | |||| ||||||| ||||||| | | ||||| |||| |||||| |||| || |||||||||| |||||| |||| |
|
|
| T |
29011011 |
aacaccaagtttcttcctaaaaaacttaaatttgtcaagtttcaaagctttagtaaaaccatatgcaagttgcagttctgtaggacaaaactgcagctca |
29011110 |
T |
|
| Q |
142 |
atcataccatta |
153 |
Q |
| |
|
| ||| |||||| |
|
|
| T |
29011111 |
accattccatta |
29011122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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