View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20955_low_8 (Length: 238)
Name: NF20955_low_8
Description: NF20955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20955_low_8 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 2795178 - 2794958
Alignment:
| Q |
18 |
ctttcataggcgcaacataaacaattttataagcactatggtcaattgaaccatcaccaggatttctatgccgtgcaatctcttgaagtatggtaagaac |
117 |
Q |
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| T |
2795178 |
ctttcataggcgcaacataaacaattttataagcactatggtcaattgaaccatcaccaggatttctatgccgtgcaatctcttgaagtatggtaagaac |
2795079 |
T |
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| Q |
118 |
agcaacattggtttttccagcaccagttgtagcacaaagtaaaagattatccgatttaaacagagcagtctcgtataccttgctctgcactctattcaat |
217 |
Q |
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| T |
2795078 |
agcaacattggtttttccagcaccagttggagcacaaagtaaaagattatccgatttaaacagagcagtctcatataccttgctctgcactctattcaat |
2794979 |
T |
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| Q |
218 |
tgtatcattcctttgaaggct |
238 |
Q |
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||||||||||||||||||||| |
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| T |
2794978 |
tgtatcattcctttgaaggct |
2794958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 18 - 234
Target Start/End: Complemental strand, 29262691 - 29262475
Alignment:
| Q |
18 |
ctttcataggcgcaacataaacaattttataagcactatggtcaattgaaccatcaccaggatttctatgccgtgcaatctcttgaagtatggtaagaac |
117 |
Q |
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||||||| || |||||||| ||||||||||| ||||| |||||||| ||||||||| | | ||| |||||||| ||||||| |||||| || |||||||| |
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| T |
29262691 |
ctttcattggtgcaacatatacaattttatatgcactgtggtcaatagaaccatcatcggtattcctatgccgcgcaatctgttgaaggatagtaagaac |
29262592 |
T |
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| Q |
118 |
agcaacattggtttttccagcaccagttgtagcacaaagtaaaagattatccgatttaaacagagcagtctcgtataccttgctctgcactctattcaat |
217 |
Q |
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| T |
29262591 |
agcaacattcgtttttccagcaccggtaggggcacaaagcaacaaattatcaggtttgaagagagcagtttcataaaccttgctctgaactctattcaac |
29262492 |
T |
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| Q |
218 |
tgtatcattcctttgaa |
234 |
Q |
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||| ||||||||||||| |
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| T |
29262491 |
tgtgtcattcctttgaa |
29262475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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