View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20955_low_9 (Length: 229)

Name: NF20955_low_9
Description: NF20955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20955_low_9
NF20955_low_9
[»] chr2 (22 HSPs)
chr2 (17-229)||(10348236-10348448)
chr2 (93-229)||(9357710-9357846)
chr2 (97-229)||(8572969-8573101)
chr2 (93-229)||(10353651-10353787)
chr2 (93-229)||(9316558-9316694)
chr2 (93-229)||(9283654-9283790)
chr2 (40-162)||(10372338-10372460)
chr2 (93-162)||(9275051-9275120)
chr2 (93-166)||(9329129-9329202)
chr2 (93-229)||(9292458-9292594)
chr2 (98-225)||(9321511-9321638)
chr2 (126-229)||(7115116-7115219)
chr2 (95-229)||(10336367-10336501)
chr2 (17-70)||(9329044-9329097)
chr2 (94-163)||(12005657-12005726)
chr2 (93-163)||(9060665-9060735)
chr2 (94-152)||(12012096-12012154)
chr2 (94-150)||(14550902-14550958)
chr2 (115-166)||(11987017-11987068)
chr2 (17-65)||(9292373-9292421)
chr2 (17-65)||(9316473-9316521)
chr2 (17-65)||(9357628-9357676)
[»] chr3 (1 HSPs)
chr3 (106-229)||(37463041-37463164)
[»] scaffold0667 (1 HSPs)
scaffold0667 (39-229)||(4950-5143)
[»] chr4 (2 HSPs)
chr4 (101-229)||(26575411-26575539)
chr4 (17-67)||(26575318-26575368)
[»] chr8 (1 HSPs)
chr8 (94-229)||(41966187-41966322)
[»] chr1 (1 HSPs)
chr1 (17-63)||(29467429-29467475)


Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 17 - 229
Target Start/End: Original strand, 10348236 - 10348448
Alignment:
Q  17 agtttgtaatcaccggatatttgatcaaaaccgaagccgtgaacgcataaggagcatttgtcgtcgtagttaagaataggaataggaagagggagaaaag 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10348236 agtttgtaatcaccggatatttgatcaaaaccgaagccgtgaacgcataaggagcatttgtcgtcgtagttaagaataggaataggaagagggagaaaag 10348335  T
Q  117 ggataatgtgatgtttacgggtgttagggttccagattgtgatttcgttgaggttgttaggatgcgtgaaaacgattaccccagtggagatggcgaggag 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  10348336 ggataatgtgatgtttacgggtgttagggttccagattgtgatttcgttgaggttgttaggatgcgtgaaaacgattacccctgtggagatggcgaggag 10348435  T
Q  217 gccgttacatgaa 229  Q
    |||||||||||||    
T  10348436 gccgttacatgaa 10348448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 93 - 229
Target Start/End: Original strand, 9357710 - 9357846
Alignment:
Q  93 taggaataggaagagggagaaaagggataatgtgatgtttacgggtgttagggttccagattgtgatttcgttgaggttgttaggatgcgtgaaaacgat 192  Q
    |||| |||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||| ||||||||||  |  |||||||||| ||||| ||||    
T  9357710 tagggataggaagagggaggaaagggataatgtgatgtttacggatgttatggttccagattgagatttcgttggcggcgttaggatgcctgaaagcgat 9357809  T
Q  193 taccccagtggagatggcgaggaggccgttacatgaa 229  Q
    | | ||| |||||||||||||||||||||||||||||    
T  9357810 ttcgccattggagatggcgaggaggccgttacatgaa 9357846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 97 - 229
Target Start/End: Complemental strand, 8573101 - 8572969
Alignment:
Q  97 aataggaagagggagaaaagggataatgtgatgtttacgggtgttagggttccagattgtgatttcgttgaggttgttaggatgcgtgaaaacgattacc 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||  ||  ||||| || || ||| ||||||      
T  8573101 aataggaagagggagaaaagggataatgtgatgtttacgggtgttagggttccagattgcgatttggttggcgtcattaggttgagtcaaagcgattaaa 8573002  T
Q  197 ccagtggagatggcgaggaggccgttacatgaa 229  Q
    ||| | || ||||||||||||||||||||||||    
T  8573001 ccattagaaatggcgaggaggccgttacatgaa 8572969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 93 - 229
Target Start/End: Original strand, 10353651 - 10353787
Alignment:
Q  93 taggaataggaagagggagaaaagggataatgtgatgtttacgggtgttagggttccagattgtgatttcgttgaggttgttaggatgcgtgaaaacgat 192  Q
    |||| ||||||||||||||||||||||||||  |||| ||||||||||| |||||||| ||||||||||||||| ||  |||||||||||||||| | ||    
T  10353651 tagggataggaagagggagaaaagggataatccgatgcttacgggtgttggggttccatattgtgatttcgttgggggcgttaggatgcgtgaaagctat 10353750  T
Q  193 taccccagtggagatggcgaggaggccgttacatgaa 229  Q
    ||| ||   ||| ||||||||||||||||||||||||    
T  10353751 tacgccgtgggacatggcgaggaggccgttacatgaa 10353787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 93 - 229
Target Start/End: Original strand, 9316558 - 9316694
Alignment:
Q  93 taggaataggaagagggagaaaagggataatgtgatgtttacgggtgttagggttccagattgtgatttcgttgaggttgttaggatgcgtgaaaacgat 192  Q
    |||| |||| |||||| || |||||||||||  |||||||||||||||||||||||||||||||||||||||||  |  || ||||||| ||||| ||||    
T  9316558 tagggatagcaagaggaaggaaagggataatacgatgtttacgggtgttagggttccagattgtgatttcgttggcgccgtaaggatgcatgaaagcgat 9316657  T
Q  193 taccccagtggagatggcgaggaggccgttacatgaa 229  Q
    |   ||| |||| |||||||| |||||||||||||||    
T  9316658 ttgaccattggaaatggcgagaaggccgttacatgaa 9316694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 93 - 229
Target Start/End: Complemental strand, 9283790 - 9283654
Alignment:
Q  93 taggaataggaagagggagaaaagggataatgtgatgtttacgggtgttagggttccagattgtgatttc-gttgaggttgttaggatgcgtgaaaacga 191  Q
    |||| ||||||||||||||||||||||||||   ||||||||||||||||| |||||||||||||||||| ||||  || ||| |||||||| ||| | |    
T  9283790 tagggataggaagagggagaaaagggataatccaatgtttacgggtgttagtgttccagattgtgatttcagttg-cgtcgtttggatgcgtaaaagcaa 9283692  T
Q  192 ttaccccagtggagatggcgaggaggccgttacatgaa 229  Q
    ||   ||| || ||||||||||||||||||||||||||    
T  9283691 ttgggccattgtagatggcgaggaggccgttacatgaa 9283654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 40 - 162
Target Start/End: Original strand, 10372338 - 10372460
Alignment:
Q  40 atcaaaaccgaagccgtgaacgcataaggagcatttg-tcgtcgtagttaagaataggaataggaagagggagaaaagggataatgtgatgtttacgggt 138  Q
    ||||||||||||||| |||||||||||||||  | || | || |  || |||||||||||||||||||||||||||||||||||    ||||||||||||    
T  10372338 atcaaaaccgaagccatgaacgcataaggaggctctgattgtggg-gtcaagaataggaataggaagagggagaaaagggataaccctatgtttacgggt 10372436  T
Q  139 gttagggttccagattgtgatttc 162  Q
    |||||||||||||| |||||||||    
T  10372437 gttagggttccagaatgtgatttc 10372460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 93 - 162
Target Start/End: Original strand, 9275051 - 9275120
Alignment:
Q  93 taggaataggaagagggagaaaagggataatgtgatgtttacgggtgttagggttccagattgtgatttc 162  Q
    |||| ||||||||||||||||||||||||||  ||||||||| ||||||||||||||||||||| |||||    
T  9275051 taggtataggaagagggagaaaagggataatccgatgtttaccggtgttagggttccagattgtaatttc 9275120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 93 - 166
Target Start/End: Original strand, 9329129 - 9329202
Alignment:
Q  93 taggaataggaagagggagaaaagggataatgtgatgtttacgggtgttagggttccagattgtgatttcgttg 166  Q
    |||| |||| |||||| || |||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  9329129 tagggatagcaagaggtaggaaagggataatacgatgtttacgggtgttagggttccagattgtgatttcgttg 9329202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 93 - 229
Target Start/End: Original strand, 9292458 - 9292594
Alignment:
Q  93 taggaataggaagagggagaaaagggataatgtgatgtttacgggtgttagggttccagattgtgatttcgttgaggttgttaggatgcgtgaaaacgat 192  Q
    |||| |||| |||||||||||||||||||||  |||||||| | |||||||||||| ||| ||||||||||||  ||  || ||||||||||||   |||    
T  9292458 tagggatagcaagagggagaaaagggataatccgatgtttatgagtgttagggttcaagactgtgatttcgttaggggcgtaaggatgcgtgaagcagat 9292557  T
Q  193 taccccagtggagatggcgaggaggccgttacatgaa 229  Q
    |   | | |||| ||||||||||||||||||||||||    
T  9292558 ttggctattggaaatggcgaggaggccgttacatgaa 9292594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 98 - 225
Target Start/End: Original strand, 9321511 - 9321638
Alignment:
Q  98 ataggaagagggagaaaagggataatgtgatgtttacgggtgttagggttccagattgtgatttcgttgaggttgttaggatgcgtgaaaacgattaccc 197  Q
    ||||||||||| || |||||||| ||  |||| ||||| ||| |||||||||||||||||||||||||| |||||||||||||  ||||| | | |   |    
T  9321511 ataggaagaggtaggaaagggatcatacgatgcttacgagtgctagggttccagattgtgatttcgttggggttgttaggatgattgaaagccagttggc 9321610  T
Q  198 cagtggagatggcgaggaggccgttaca 225  Q
    |   ||||||||||||||||||||||||    
T  9321611 cgtgggagatggcgaggaggccgttaca 9321638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 126 - 229
Target Start/End: Complemental strand, 7115219 - 7115116
Alignment:
Q  126 gatgtttacgggtgttagggttccagattgtgatttc-gttgaggttgttaggatgcgtgaaaacgattaccccagtggagatggcgaggaggccgttac 224  Q
    |||||||||||||||||| |||||||||||||||||| ||||  ||  ||||||| ||| ||| |||||   ||| ||||||||||||||||||||||||    
T  7115219 gatgtttacgggtgttagtgttccagattgtgatttcagttg-cgtgattaggatacgtaaaagcgatttggccattggagatggcgaggaggccgttac 7115121  T
Q  225 atgaa 229  Q
    |||||    
T  7115120 atgaa 7115116  T

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Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 95 - 229
Target Start/End: Original strand, 10336367 - 10336501
Alignment:
Q  95 ggaataggaagagggagaaaagggataatgtgatgtttacgggtgttagggttccagattgtgatttcgttgaggttgttaggatgcgtgaaaacgatta 194  Q
    |||||||||||||||||| ||||||||||  ||||||||||| || |||| || |||| || |||||| |||  |  || ||| |  |||||| |||||     
T  10336367 ggaataggaagagggagataagggataatccgatgtttacggatggtaggattacagaatgcgatttcattggcggagtaagggttagtgaaagcgattt 10336466  T
Q  195 ccccagtggagatggcgaggaggccgttacatgaa 229  Q
    | ||| ||||||||||||||||||| || ||||||    
T  10336467 cgccattggagatggcgaggaggccattgcatgaa 10336501  T

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Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 9329044 - 9329097
Alignment:
Q  17 agtttgtaatcaccggatatttgatcaaaaccgaagccgtgaacgcataaggag 70  Q
    |||||||||||||||||||   ||||||||||||| ||||||||||||||||||    
T  9329044 agtttgtaatcaccggataaaggatcaaaaccgaaaccgtgaacgcataaggag 9329097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 94 - 163
Target Start/End: Complemental strand, 12005726 - 12005657
Alignment:
Q  94 aggaataggaagagggagaaaagggataatgtgatgtttacgggtgttagggttccagattgtgatttcg 163  Q
    ||||||||||| |||||||  |||||||||  ||||||||||| |||||||||||||||  |||||||||    
T  12005726 aggaataggaatagggagattagggataatccgatgtttacggatgttagggttccagaaagtgatttcg 12005657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 93 - 163
Target Start/End: Complemental strand, 9060735 - 9060665
Alignment:
Q  93 taggaataggaagagggagaaaagggataatgtgatgtttacgggtgttagggttccagattgtgatttcg 163  Q
    |||| ||||||||||||| |||||||||  |  ||| ||| |||||||||||||||||||||||| |||||    
T  9060735 tagggataggaagagggataaaagggatggtccgatctttgcgggtgttagggttccagattgtggtttcg 9060665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 94 - 152
Target Start/End: Complemental strand, 12012154 - 12012096
Alignment:
Q  94 aggaataggaagagggagaaaagggataatgtgatgtttacgggtgttagggttccaga 152  Q
    |||||||| || |||||||  ||||||||| |||||||||||| |||||||||||||||    
T  12012154 aggaatagaaacagggagattagggataatctgatgtttacggatgttagggttccaga 12012096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 150
Target Start/End: Original strand, 14550902 - 14550958
Alignment:
Q  94 aggaataggaagagggagaaaagggataatgtgatgtttacgggtgttagggttcca 150  Q
    ||||||| ||| |||||||  |||||||||| ||||||||||| |||||||||||||    
T  14550902 aggaataagaatagggagatcagggataatgcgatgtttacggatgttagggttcca 14550958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 166
Target Start/End: Complemental strand, 11987068 - 11987017
Alignment:
Q  115 agggataatgtgatgtttacgggtgttagggttccagattgtgatttcgttg 166  Q
    |||||||||  |||||||||||||||||||||||||||  | ||||||||||    
T  11987068 agggataatccgatgtttacgggtgttagggttccagaaagcgatttcgttg 11987017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 9292373 - 9292421
Alignment:
Q  17 agtttgtaatcaccggatatttgatcaaaaccgaagccgtgaacgcata 65  Q
    ||||||||||| |||| || | ||||| |||||||||||||||||||||    
T  9292373 agtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcata 9292421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 9316473 - 9316521
Alignment:
Q  17 agtttgtaatcaccggatatttgatcaaaaccgaagccgtgaacgcata 65  Q
    |||||||||||||| | |  | |||||||||||||||||||||||||||    
T  9316473 agtttgtaatcacctgttgatggatcaaaaccgaagccgtgaacgcata 9316521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 9357628 - 9357676
Alignment:
Q  17 agtttgtaatcaccggatatttgatcaaaaccgaagccgtgaacgcata 65  Q
    ||||||||||| |||| ||   |||||||||||||||||||||||||||    
T  9357628 agtttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgcata 9357676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 106 - 229
Target Start/End: Original strand, 37463041 - 37463164
Alignment:
Q  106 agggagaaaagggataatgtgatgtttacgggtgttagggttccagattgtgatttcgttgaggttgttaggatgcgtgaaaacgattaccccagtggag 205  Q
    ||||||||||||||||||  |||||||||| ||||||||||||||||||||||||||||||  |  |||||||||||||||| |||||   ||| |||||    
T  37463041 agggagaaaagggataatcagatgtttacgtgtgttagggttccagattgtgatttcgttggcggcgttaggatgcgtgaaagcgatttggccattggag 37463140  T
Q  206 atggcgaggaggccgttacatgaa 229  Q
    || |||||||||||||||||||||    
T  37463141 atagcgaggaggccgttacatgaa 37463164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 39 - 229
Target Start/End: Original strand, 4950 - 5143
Alignment:
Q  39 gatcaaaaccgaagccgtgaacgcataaggagcatttgtcgtcgta--gttaa-gaataggaataggaagagggagaaaagggataatgtgatgtttacg 135  Q
    |||||||||||||||||||||||||||||||||| ||   |||| |  |  || ||  || |||||| ||||||||||||||||||||||||||||||||    
T  4950 gatcaaaaccgaagccgtgaacgcataaggagcagttcatgtcggatggagaacgaggagtaataggtagagggagaaaagggataatgtgatgtttacg 5049  T
Q  136 ggtgttagggttccagattgtgatttcgttgaggttgttaggatgcgtgaaaacgattaccccagtggagatggcgaggaggccgttacatgaa 229  Q
    | |||||||||||||||||||||||||||||  |  |||||||||  ||| | ||||| | ||  |||| | ||||||||||||||||||||||    
T  5050 gatgttagggttccagattgtgatttcgttggcggcgttaggatgtctgagagcgatttcgccgttggaaacggcgaggaggccgttacatgaa 5143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 2e-26; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 101 - 229
Target Start/End: Original strand, 26575411 - 26575539
Alignment:
Q  101 ggaagagggagaaaagggataatgtgatgtttacgggtgttagggttccagattgtgatttcgttgaggttgttaggatgcgtgaaaacgattaccccag 200  Q
    |||||||||||||||||||||||  ||| ||||| ||||| |||||||||||||| |||||||||| ||  ||| |||||||||||| | ||||| ||      
T  26575411 ggaagagggagaaaagggataatccgatatttaccggtgtaagggttccagattgcgatttcgttgggggcgttgggatgcgtgaaagccattacgccgt 26575510  T
Q  201 tggagatggcgaggaggccgttacatgaa 229  Q
     ||| ||||||||||||||||||||||||    
T  26575511 gggacatggcgaggaggccgttacatgaa 26575539  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 26575318 - 26575368
Alignment:
Q  17 agtttgtaatcaccggatatttgatcaaaaccgaagccgtgaacgcataag 67  Q
    ||||||||||| |||||||    ||||||||||||||||||||||||||||    
T  26575318 agtttgtaatcgccggataaagaatcaaaaccgaagccgtgaacgcataag 26575368  T

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Target: chr8 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 94 - 229
Target Start/End: Complemental strand, 41966322 - 41966187
Alignment:
Q  94 aggaataggaagagggagaaaagggataatgtgatgtttacgggtgttagggttccagattgtgatttcgttgaggttgttaggatgcgtgaaaacgatt 193  Q
    ||||||||||| ||||||||||||||||||  ||||||||| | ||||||||||||||| ||||||||| ||   || || ||| |  | |||| |||||    
T  41966322 aggaataggaatagggagaaaagggataatccgatgtttacagatgttagggttccagaatgtgatttcatttttgtcgtaagggttagagaaatcgatt 41966223  T
Q  194 accccagtggagatggcgaggaggccgttacatgaa 229  Q
     | ||| ||||||||  |||||||||||||||||||    
T  41966222 tcgccattggagatgcagaggaggccgttacatgaa 41966187  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 29467475 - 29467429
Alignment:
Q  17 agtttgtaatcaccggatatttgatcaaaaccgaagccgtgaacgca 63  Q
    |||||||||||| ||| || | |||||||||||||||||||||||||    
T  29467475 agtttgtaatcatcggttaatggatcaaaaccgaagccgtgaacgca 29467429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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