View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20956_high_1 (Length: 494)

Name: NF20956_high_1
Description: NF20956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20956_high_1
NF20956_high_1
[»] chr4 (18 HSPs)
chr4 (14-477)||(6030615-6031078)
chr4 (286-393)||(3750049-3750155)
chr4 (286-415)||(5570099-5570227)
chr4 (331-427)||(5851976-5852072)
chr4 (328-427)||(5554340-5554439)
chr4 (286-415)||(5885290-5885418)
chr4 (328-436)||(5859202-5859310)
chr4 (198-258)||(5894366-5894426)
chr4 (19-94)||(5552384-5552459)
chr4 (226-275)||(5554222-5554271)
chr4 (19-100)||(5853910-5853991)
chr4 (234-274)||(5565584-5565624)
chr4 (48-105)||(5540212-5540269)
chr4 (32-105)||(5572075-5572148)
chr4 (131-196)||(5895881-5895946)
chr4 (198-274)||(5559994-5560070)
chr4 (286-346)||(5560106-5560165)
chr4 (32-96)||(5584291-5584355)
[»] chr8 (2 HSPs)
chr8 (210-275)||(1486246-1486311)
chr8 (286-420)||(23268519-23268652)
[»] scaffold0454 (1 HSPs)
scaffold0454 (210-258)||(1431-1479)


Alignment Details
Target: chr4 (Bit Score: 433; Significance: 0; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 14 - 477
Target Start/End: Complemental strand, 6031078 - 6030615
Alignment:
Q  14 atcagtaaacatgtcggtattgttccataaatcttattaatggaaagattaagcacctgaatgtttgaagaattgcagagggaatgaaggatgctttgag 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  6031078 atcagtaaacatgtcggtattgttccataaatcttattaatggaaagattaagcacctgaatgtttgaagcattgcagagggaatgaaggatgctttgag 6030979  T
Q  114 agattgaaaaactgtaaaagacatgtaattaccaatatattgtgggatagcagaaaatttaacggttgagaaatctaaatacttaggtctaggcccataa 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  6030978 agattgaaaaactgtaaaagacatgtaattaccaatatattgtgggatagcagaaaatttgacggttgagaaatctaaatacttaggtctaggcccataa 6030879  T
Q  214 catgtcattcattgtcaaaagttacaccgctccaattgcagcaaggaatgttttgattccatgtcttcaatttgagattggt-ttttaattgaagcaaca 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  6030878 catgtcattcattgtcaaaagttacaccgctccaattgcagcaaggaatgttttgattccatgtcttcaatttgagattggttttttaattgaagcaaca 6030779  T
Q  313 atgagggttgattcgtcaagacatttggcagaggtaacagagaatttgaaactgatgtaaatgcagtagtagcatagaaggcaggaaaacaatgaaagta 412  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  6030778 atgagggttga-tcgccaagacatttggcagaggtaacagagaatttgaaactgatgtaaatgcagtagtagcatagaaggaaggaaaacaatgaaagta 6030680  T
Q  413 atgcaattttcattgctgtctactgtgagtctcaaccagtgtagtcatattaatttactggttct 477  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6030679 atgcaattttcattgctgtctactgtgagtctcaaccagtgtagtcatattaatttactggttct 6030615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 286 - 393
Target Start/End: Original strand, 3750049 - 3750155
Alignment:
Q  286 tgagattggtttttaattgaagcaacaatgagggttgattcgtcaagacatttggcagaggtaacagagaatttgaaactgatgtaaatgcagtagtagc 385  Q
    |||||||| ||||||||||||||||||||||  |||||| | |||||||||||||||||||||||| ||| || ||||||||  || |||| ||||||||    
T  3750049 tgagattgttttttaattgaagcaacaatgattgttgatcc-tcaagacatttggcagaggtaacaaagatttggaaactgagatatatgctgtagtagc 3750147  T
Q  386 atagaagg 393  Q
    | ||||||    
T  3750148 aaagaagg 3750155  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 286 - 415
Target Start/End: Complemental strand, 5570227 - 5570099
Alignment:
Q  286 tgagattggtttttaattgaagcaacaatgagggttgattcgtcaagacatttggcagaggtaacagagaatttgaaactgatgtaaatgcagtagtagc 385  Q
    |||||||  |||||| ||| |||||||| ||  |||||| | |||||||||||||| |||| ||||| || || |||| |||  || |||||||||||||    
T  5570227 tgagattattttttagttggagcaacaacgattgttgatcc-tcaagacatttggctgaggcaacagtgatttggaaagtgagatatatgcagtagtagc 5570129  T
Q  386 atagaaggcaggaaaacaatgaaagtaatg 415  Q
    |||||||| ||||||||||||||| |||||    
T  5570128 atagaaggaaggaaaacaatgaaactaatg 5570099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 331 - 427
Target Start/End: Complemental strand, 5852072 - 5851976
Alignment:
Q  331 agacatttggcagaggtaacagagaatttgaaactgatgtaaatgcagtagtagcatagaaggcaggaaaacaatgaaagtaatgcaattttcattg 427  Q
    ||||||||||| |||| ||| | || || ||||||||| ||||||||||||||||| |||| | |||||||||||| |||||||| |||| ||||||    
T  5852072 agacatttggctgaggcaacggtgatttggaaactgatataaatgcagtagtagcagagaatgaaggaaaacaatggaagtaatgtaattctcattg 5851976  T

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Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 328 - 427
Target Start/End: Original strand, 5554340 - 5554439
Alignment:
Q  328 tcaagacatttggcagaggtaacagagaatttgaaactgatgtaaatgcagtagtagcatagaaggcaggaaaacaatgaaagtaatgcaattttcattg 427  Q
    ||||||||||||||||||| || ||||| || ||||||  | || |||||||| |||||  ||||| ||||||||||||| | ||||| |||||||||||    
T  5554340 tcaagacatttggcagaggcaaaagagatttggaaactattatatatgcagtaatagcagcgaaggaaggaaaacaatgacactaatgtaattttcattg 5554439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 286 - 415
Target Start/End: Complemental strand, 5885418 - 5885290
Alignment:
Q  286 tgagattggtttttaattgaagcaacaatgagggttgattcgtcaagacatttggcagaggtaacagagaatttgaaactgatgtaaatgcagtagtagc 385  Q
    |||||||| |||||||||| ||||||| |||  |||||| | ||||||||||||||||||| || ||||   | |||| |||   |||||||||||||||    
T  5885418 tgagattgttttttaattggagcaacagtgattgttgatcc-tcaagacatttggcagaggcaagagagttctggaaagtgaaaaaaatgcagtagtagc 5885320  T
Q  386 atagaaggcaggaaaacaatgaaagtaatg 415  Q
    | | ||||  ||||||| ||||||||||||    
T  5885319 agataaggatggaaaacgatgaaagtaatg 5885290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 328 - 436
Target Start/End: Original strand, 5859202 - 5859310
Alignment:
Q  328 tcaagacatttggcagaggtaacagagaatttgaaactgatgtaaatgcagtagtagcatagaaggcaggaaaacaatgaaagtaatgcaattttcattg 427  Q
    |||||||||||||||||||  | ||||| || |||| |||| || ||||||||| || | |||||  |||||||||||||||||| || |||| ||||||    
T  5859202 tcaagacatttggcagaggctaaagagatttggaaagtgatatatatgcagtagcagaagagaagaaaggaaaacaatgaaagtattgtaattctcattg 5859301  T
Q  428 ctgtctact 436  Q
     ||| ||||    
T  5859302 ttgtttact 5859310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 198 - 258
Target Start/End: Complemental strand, 5894426 - 5894366
Alignment:
Q  198 aggtctaggcccataacatgtcattcattgtcaaaagttacaccgctccaattgcagcaag 258  Q
    ||||| ||||| ||||||||||  ||||||||| |||||||||| ||||||||||||||||    
T  5894426 aggtcaaggccaataacatgtccctcattgtcacaagttacaccactccaattgcagcaag 5894366  T

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Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 5552384 - 5552459
Alignment:
Q  19 taaacatgtcggtattgttccataaatcttattaatggaaagattaagcacctgaatgtttgaagaattgcagagg 94  Q
    ||||||||  || ||||||||| |||| |||||||||||||||| |||||| ||||  ||||||| ||||||||||    
T  5552384 taaacatgcgggcattgttccagaaattttattaatggaaagatcaagcacttgaagatttgaagcattgcagagg 5552459  T

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Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 226 - 275
Target Start/End: Original strand, 5554222 - 5554271
Alignment:
Q  226 tgtcaaaagttacaccgctccaattgcagcaaggaatgttttgattccat 275  Q
    ||||| |||||||||||||||||||||||||||  ||| |||||||||||    
T  5554222 tgtcacaagttacaccgctccaattgcagcaagctatgctttgattccat 5554271  T

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Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 5853991 - 5853910
Alignment:
Q  19 taaacatgtcggtattgttccataaatcttattaatggaaagattaagcacctgaatgtttgaagaattgcagagggaatga 100  Q
    ||||||||  || ||||||||| |||| |||||||||||||||| ||| || ||||  ||||||| |||||||||| |||||    
T  5853991 taaacatgcgggaattgttccaaaaattttattaatggaaagatcaagtacttgaagatttgaagcattgcagaggaaatga 5853910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 234 - 274
Target Start/End: Original strand, 5565584 - 5565624
Alignment:
Q  234 gttacaccgctccaattgcagcaaggaatgttttgattcca 274  Q
    |||||||| ||||||||||||||||||||| ||||||||||    
T  5565584 gttacaccactccaattgcagcaaggaatgctttgattcca 5565624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 105
Target Start/End: Complemental strand, 5540269 - 5540212
Alignment:
Q  48 tattaatggaaagattaagcacctgaatgtttgaagaattgcagagggaatgaaggat 105  Q
    |||||||||||| || |||||| ||||  ||||||| |||||||||||||||| ||||    
T  5540269 tattaatggaaatatcaagcacttgaagatttgaagcattgcagagggaatgagggat 5540212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 5572148 - 5572075
Alignment:
Q  32 attgttccataaatcttattaatggaaagattaagcacctgaatgtttgaagaattgcagagggaatgaaggat 105  Q
    ||||||||| ||||  |||||||||||| || |||||| ||||  ||||||| |||||||||||| ||| ||||    
T  5572148 attgttccagaaatgctattaatggaaatatcaagcacttgaagatttgaagcattgcagagggattgagggat 5572075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 196
Target Start/End: Complemental strand, 5895946 - 5895881
Alignment:
Q  131 aagacatgtaattaccaatatattgtgggatagcagaaaatttaacggttgagaaatctaaatact 196  Q
    |||||| ||||||||||||||  ||||||||| |||| ||||||  ||||||| |||| |||||||    
T  5895946 aagacaagtaattaccaatatcatgtgggataacagagaatttattggttgagtaatccaaatact 5895881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 198 - 274
Target Start/End: Original strand, 5559994 - 5560070
Alignment:
Q  198 aggtctaggcccataacatgtcattcattgtcaaaagttacaccgctccaattgcagcaaggaatgttttgattcca 274  Q
    ||||| ||||| ||||||||||  ||| ||||| | || ||||| |||||||||||||||| | || ||||||||||    
T  5559994 aggtcaaggccaataacatgtccctcaatgtcacatgtaacacccctccaattgcagcaagcagtgctttgattcca 5560070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 286 - 346
Target Start/End: Original strand, 5560106 - 5560165
Alignment:
Q  286 tgagattggtttttaattgaagcaacaatgagggttgattcgtcaagacatttggcagagg 346  Q
    |||||||| ||||||||||| ||||||||||  ||||| || ||||||||||||| |||||    
T  5560106 tgagattgttttttaattgatgcaacaatgattgttga-tcctcaagacatttggtagagg 5560165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 32 - 96
Target Start/End: Complemental strand, 5584355 - 5584291
Alignment:
Q  32 attgttccataaatcttattaatggaaagattaagcacctgaatgtttgaagaattgcagaggga 96  Q
    ||||||||| ||||  |||||||||||| || |||||| ||||  ||||||| ||||||||||||    
T  5584355 attgttccagaaatgctattaatggaaatatcaagcacttgaagatttgaagcattgcagaggga 5584291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 210 - 275
Target Start/End: Original strand, 1486246 - 1486311
Alignment:
Q  210 ataacatgtcattcattgtcaaaagttacaccgctccaattgcagcaaggaatgttttgattccat 275  Q
    ||||||||||  ||||||||| |||| ||||| |||||||||||||||| | |||||| |||||||    
T  1486246 ataacatgtccctcattgtcacaagtaacaccactccaattgcagcaagtagtgtttttattccat 1486311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 286 - 420
Target Start/End: Original strand, 23268519 - 23268652
Alignment:
Q  286 tgagattggtttttaattgaagcaacaatgagggttgattcgtcaagacatttggcagaggtaacagagaatttgaaactgatgtaaatgcagtagtagc 385  Q
    |||||||| ||||||||||||||||||  |   |||||| | ||||||||||| ||||||| || |||   || ||||  ||   |||||||||||| ||    
T  23268519 tgagattgttttttaattgaagcaacagagttcgttgatcc-tcaagacatttagcagaggaaagagaagtttggaaaaagaaaaaaatgcagtagtggc 23268617  T
Q  386 atagaaggcaggaaaacaatgaaagtaatgcaatt 420  Q
    | | |||| ||||||||||||||||||||| ||||    
T  23268618 agaaaaggaaggaaaacaatgaaagtaatgtaatt 23268652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0454 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0454
Description:

Target: scaffold0454; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 210 - 258
Target Start/End: Original strand, 1431 - 1479
Alignment:
Q  210 ataacatgtcattcattgtcaaaagttacaccgctccaattgcagcaag 258  Q
    ||||||||||  ||||||||| |||| ||||| ||||||||||||||||    
T  1431 ataacatgtccctcattgtcacaagtaacaccactccaattgcagcaag 1479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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