View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20956_high_15 (Length: 233)
Name: NF20956_high_15
Description: NF20956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20956_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 34 - 228
Target Start/End: Original strand, 38548150 - 38548364
Alignment:
| Q |
34 |
aaaataattaaggattttcgttattaattctcatgatgtttcttgtttccttagaccttgtgctagaattaagcaagtggtaacaaagtt---------- |
123 |
Q |
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| T |
38548150 |
aaaataattaaggattttcgttattaattctcatgatgtttcttgtttccttagaccttgtgctagaattaagcaagtggtaacaaagttacaagatcgt |
38548249 |
T |
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| Q |
124 |
----------gtttaccgttaccacaaattgtttgtattttgtttgaagttaaatcaatactgaattttctcaattgtttgtctctcatgtcttagaaat |
213 |
Q |
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| T |
38548250 |
ttgcatagttgtttaccgttaccacaaattgtttgtattttgtttgaagttaaatcaatactgaattttctcaattgtttgtctctcatgtcttagaaat |
38548349 |
T |
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| Q |
214 |
ctctcctctaaattt |
228 |
Q |
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||||||||||||||| |
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| T |
38548350 |
ctctcctctaaattt |
38548364 |
T |
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