View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20956_high_2 (Length: 432)
Name: NF20956_high_2
Description: NF20956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20956_high_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 123; Significance: 5e-63; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 130 - 276
Target Start/End: Original strand, 9221199 - 9221345
Alignment:
| Q |
130 |
ccgcctacacttgaattccaacaattggtaaatccactctcaagcaaaaccaagtgtcaatttaaagattacaaggtttaccattcaatttggtcttttg |
229 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
9221199 |
ccgcctacacttaaattccaaaaattggtaaatccactcttaagcaaaaccaagtgtcagtttaaagattacaaggtttactattcaatttggtattttg |
9221298 |
T |
|
| Q |
230 |
aattcaatttacaaagtcaaaatttgtgtagtccaatcttaattcga |
276 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9221299 |
aattcaatttacaaagtcaaaatttgtgtagtccaatcttaattcga |
9221345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 277 - 411
Target Start/End: Original strand, 9221418 - 9221552
Alignment:
| Q |
277 |
ctatggttttattttttctctattaataaaattatttttgcatnnnnnnntgtacctaaagttaacaaatggagcatggcatgattcatgacaaggcttt |
376 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
9221418 |
ctatggttttattttttctctattaataaaattatttttgcataaaaaaatgtacctaaagttaacaaatggaccatggcatgattcatgacaaggcttt |
9221517 |
T |
|
| Q |
377 |
tataaagctagtttcatgaagaagaataataaggc |
411 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
9221518 |
tataaagctagtttcatgaagaagaataataaggc |
9221552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 88
Target Start/End: Original strand, 9221112 - 9221197
Alignment:
| Q |
3 |
tttactccatagaatgatcgatattttatcaatttataaagaaagagtacgggtacacccaattttatgaggtttacagtaaaagt |
88 |
Q |
| |
|
|||||| | |||||||||||||| ||||||||||||| | ||||||| |||||| || | |||||||||| ||| |||||||| |
|
|
| T |
9221112 |
tttacttcctagaatgatcgataatttatcaatttattgattaagagtatcggtacatcccaatttatgaggtgtaccgtaaaagt |
9221197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 12182874 - 12182934
Alignment:
| Q |
1 |
tttttactccatagaatgatcgatattttatcaatttataaagaaagagtacgggtacacc |
61 |
Q |
| |
|
|||||| | |||| ||| |||| || ||||||||||||||||| |||||||| |||||||| |
|
|
| T |
12182874 |
tttttatttcataaaataatcgttaatttatcaatttataaagtaagagtaccggtacacc |
12182934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 39722270 - 39722357
Alignment:
| Q |
1 |
tttttactccatagaatgatcgatattttatcaatttataaagaaagagtacgggtacacccaattttatgaggtttacagtaaaagt |
88 |
Q |
| |
|
|||||||| | |||||||||||||| ||||||||||||| ||| |||||||| ||||||| | |||||||||| ||| ||| |||| |
|
|
| T |
39722270 |
tttttacttcctagaatgatcgataatttatcaatttattaagcaagagtactagtacacctcaatttatgaggtgtaccgtagaagt |
39722357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 5532137 - 5532087
Alignment:
| Q |
12 |
tagaatgatcgatattttatcaatttataaagaaagagtacgggtacaccc |
62 |
Q |
| |
|
|||||| ||||||| ||||||||||||| ||| |||||||| ||||||||| |
|
|
| T |
5532137 |
tagaataatcgataatttatcaatttattaagcaagagtactggtacaccc |
5532087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 88
Target Start/End: Original strand, 2089204 - 2089265
Alignment:
| Q |
27 |
tttatcaatttataaagaaagagtacgggtacacccaattttatgaggtttacagtaaaagt |
88 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||| ||||||| |||| ||| ||| |||| |
|
|
| T |
2089204 |
tttatcaatttataaagcaagagtaccggtacacctcattttattaggtgtaccgtagaagt |
2089265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University