View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20956_high_3 (Length: 412)
Name: NF20956_high_3
Description: NF20956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20956_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 17 - 404
Target Start/End: Complemental strand, 40586517 - 40586123
Alignment:
| Q |
17 |
actatcttcctccagcttcatgcatggttttttattt-caaggaggaagcttttcctttgactctcactttatctggtttttgatttgatattctaccaa |
115 |
Q |
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| T |
40586517 |
actatcttcctccagcttcatgcatggttttttattttcaaggaggaagcttttcctttgactctcactttatctggtttttgatttgatattctaccaa |
40586418 |
T |
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| Q |
116 |
tcttttgcttcaaaggtttccttttcaacctaccaagttaatcacnnnnnnnctccctcttgaatgaatcttttactatatttcttccttttccaggagt |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40586417 |
tcttttgcttcaaaggtttccttttcaacctaccaagttaatcactttttttctccctcttgaatgaatcttttactatatttcttccttttccaggagt |
40586318 |
T |
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| Q |
216 |
tgaaaaaatgaatggaagtgctttgttctgtttgtagaatttggcacagaaaaataatacttttgacttagttattttataatgccagttccacttgctc |
315 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
40586317 |
tgaaaaaatggatggaagtgctttgttctgtttgtagaatttggcacagaaaaataatacttttgacttagttcttttataatgccagttccacttgctc |
40586218 |
T |
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| Q |
316 |
cttatccaactccacctccagctcctgctccagc------tccatatacaacacctccaacaaatggtatcttaacctttctttttctctgtgct |
404 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40586217 |
cttatccaactccacctccagctcctgctccagctccagctccatatacaacacctccaacaaatggtatcttaacctttctttttctctgtgct |
40586123 |
T |
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