View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20956_high_7 (Length: 319)
Name: NF20956_high_7
Description: NF20956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20956_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 6 - 299
Target Start/End: Original strand, 25744974 - 25745259
Alignment:
| Q |
6 |
gtccaagaatatcccaaaagcgaagagtctcatctcctccggctgaaaccactgttaacccatctggactctgcaagacataagagcattagtgtaactt |
105 |
Q |
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| T |
25744974 |
gtccaaaaatatcccaaaagcgaagagtctcatctcctccggctgaaaccactgttaacccatctggactctgcaagacataagagcattagtgtaactt |
25745073 |
T |
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| Q |
106 |
gaatgaaataatcaccttgataaagtttaagtggtttcattcatgtttatatgttttaacaaagttgaagtttatatgaaaacaatctgaagcagctaaa |
205 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25745074 |
gaatgaaataatcaccttgataaagtttaagtggtttgattcatgtttatatgttttaacaaagttgaagtttatatgaaaacaatctgaagcagctaaa |
25745173 |
T |
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| Q |
206 |
ttagatgctcttgccaatgaaataatgaatgactgtactcacattattacatgctttaaaaattcacattggacgattaatcgtctctcgattt |
299 |
Q |
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||||||||||||||| ||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||| |||||| |
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| T |
25745174 |
ttagatgctcttgcc--------aatgaatgactgtactcgcattcttacatgctataaaaattcacattggacgattaatcgtctcacgattt |
25745259 |
T |
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Target: chr4 (Bit Score: 155; Significance: 3e-82; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 6 - 299
Target Start/End: Complemental strand, 4349081 - 4348786
Alignment:
| Q |
6 |
gtccaagaatatcccaaaagcgaagagtctcatctcctccggctgaaaccactgttaacccatctggactctgcaagacataagagcattagtg--taac |
103 |
Q |
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|||||| |||||||||||||||||| ||||||||||| || | ||||||||| ||||| ||||||| ||||||||||||||||||||||||||| |||| |
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| T |
4349081 |
gtccaaaaatatcccaaaagcgaagcgtctcatctcccccagatgaaaccacagttaaaccatctgaactctgcaagacataagagcattagtgtataac |
4348982 |
T |
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| Q |
104 |
ttgaatgaaataatcaccttgataaagtttaagtggtttcattcatgtttatatgttttaacaaagttgaagtttat--------atgaaaacaatctga |
195 |
Q |
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||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||| | |
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| T |
4348981 |
ttgaaagaaataatccccttgttaaagtttaagtggtttcattcatgtttatatgttttaacatagttgaagttgatgtcacttgttgaaaacaatccca |
4348882 |
T |
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| Q |
196 |
agcagctaaattagatgctcttgccaatgaaataatgaatgactgtactcacattattacatgctttaaaaattcacattggacgattaatcgtctctcg |
295 |
Q |
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|||| ||| |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
4348881 |
agcaactatattagatgctcttgcc--------aatgaatgattgtactcacattattacatgctttaaaaattcacattggatgattaatcgtctctcg |
4348790 |
T |
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