View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20956_high_8 (Length: 301)
Name: NF20956_high_8
Description: NF20956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20956_high_8 |
 | |
|
| [»] chr1 (4 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-147; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 18 - 301
Target Start/End: Complemental strand, 4141311 - 4141028
Alignment:
| Q |
18 |
tttttgtattcaatgatggaagtcagagtgtggttatctcagaactaaatgcttggagcatgaatcaagcagagtttgagaatgaacaaacatattatgg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4141311 |
tttttgtattcaatgatggaagtcagagtgtggttatctcagaactaaatgcttggagcatgaatcaagcagagtttgagaatgaacaaacatattatgg |
4141212 |
T |
|
| Q |
118 |
ctaaaaagaatctggaaaatcttacaacatttatttaagataatttgtatgtgttgtatgcaggaaataatttgtgtgctgtttgctggaaataatttat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4141211 |
ctaaaaagaatctggaaaatcttacaacatttatttaagataatttgtatgtgttgtatgcaggaaataatttgtgtgctgtttgctggaaataatttat |
4141112 |
T |
|
| Q |
218 |
gttattttcttgtgtattgnnnnnnnggtttgttaaagaaataaatatgtaaactttcattggacatccataatttacaactat |
301 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4141111 |
gttattttcttgtgtattgtttttttggtttgttaaagaaataaatatgtaaactttcattggacatccataatttacaactat |
4141028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 153
Target Start/End: Complemental strand, 4136253 - 4136120
Alignment:
| Q |
18 |
tttttgtattcaatgatggaagtcagagtgtggttatctcagaactaaatgcttggagcatgaatcaagcagagtttgagaatgaacaaacatattatgg |
117 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||||||||| |||| ||||||||||||||||| |||||| |||||| | || || |||| ||| | |
|
|
| T |
4136253 |
tttttgtattcaatgatggaagccaaagtgtggttatctcacaactgaatgcttggagcatgaagcaagcacagtttggcacaga--aagcataatatag |
4136156 |
T |
|
| Q |
118 |
ctaaaaagaatctggaaaatcttacaacatttattt |
153 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
4136155 |
ctaaaaataatttggaaaatcttacaacatttattt |
4136120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 22 - 186
Target Start/End: Complemental strand, 4127324 - 4127162
Alignment:
| Q |
22 |
tgtattcaatgatggaagtcagagtgtggttatctcagaactaaatgcttggagcatgaatcaagcagagtttgagaatgaacaaacatattatggctaa |
121 |
Q |
| |
|
||||||||| ||||||| || ||||||| ||| ||| |||||||||||||||||||||| |||||||||||| ||| || | ||||| ||| ||| | |
|
|
| T |
4127324 |
tgtattcaacaatggaagccaaagtgtggctatttcacaactaaatgcttggagcatgaagcaagcagagttt-agagtgga-aaacagtatatagctga |
4127227 |
T |
|
| Q |
122 |
aaagaatctggaaaatcttacaacatttatttaagataatttgtatgtgttgtatgcaggaaata |
186 |
Q |
| |
|
| ||||| |||||||| |||| ||||||||||||||||||| | || |||||||||| |||||| |
|
|
| T |
4127226 |
atagaatttggaaaattatacagcatttatttaagataatttatttgggttgtatgcatgaaata |
4127162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 22 - 91
Target Start/End: Complemental strand, 4116361 - 4116292
Alignment:
| Q |
22 |
tgtattcaatgatggaagtcagagtgtggttatctcagaactaaatgcttggagcatgaatcaagcagag |
91 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||| || |||||| |
|
|
| T |
4116361 |
tgtattcaacaatggaagtcagagtgtggttatctcaaaactgaatgcttggagcatgaagcaggcagag |
4116292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University