View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20956_low_11 (Length: 261)
Name: NF20956_low_11
Description: NF20956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20956_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 131; Significance: 5e-68; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 114 - 244
Target Start/End: Complemental strand, 47265704 - 47265574
Alignment:
| Q |
114 |
tatatatacaattttgaaatagtgtgtaaagacccataagattacctcgatggatcgaagatagttataagcactggaaacaacaggagcatcaaacttt |
213 |
Q |
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| T |
47265704 |
tatatatacaattttgaaatagtgtgtaaagacccataagattacctcgatggatcgaagatagttataagcactggaaacaacaggagcatcaaacttt |
47265605 |
T |
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| Q |
214 |
tcatgggtagttgattcttcaccaatgctat |
244 |
Q |
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| T |
47265604 |
tcatgggtagttgattcttcaccaatgctat |
47265574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 47265856 - 47265752
Alignment:
| Q |
1 |
catttttggatcaatgtctctctgaactatatccatgtaatccttcattggtcttctctttgtctccatctaagcacaaaaacatcgaatctcaatcaaa |
100 |
Q |
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| T |
47265856 |
catttttggatcaatgtctctctgaactatatccatgtaatccttcattggtcttctctttgtctccatctaagtacaaaaacatcgaatctcgatcaaa |
47265757 |
T |
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| Q |
101 |
tattt |
105 |
Q |
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||||| |
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| T |
47265756 |
tattt |
47265752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 47258475 - 47258414
Alignment:
| Q |
13 |
aatgtctctctgaactatatccatgtaatccttcattggtcttctctttgtctccatctaag |
74 |
Q |
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| T |
47258475 |
aatgtatctctgaagtatctccatgtaatccttcattggtcttctcttttcctccaactaag |
47258414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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