View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20956_low_5 (Length: 336)
Name: NF20956_low_5
Description: NF20956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20956_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 58 - 321
Target Start/End: Original strand, 24869472 - 24869733
Alignment:
| Q |
58 |
catgattatgttatttatttaatcattgtaaaattttagtattttctatcaattttgatccgtactagttgcagtcaattgcatttataattgtaacnnn |
157 |
Q |
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| T |
24869472 |
catgagtatgttatttatttaatcattgtaaaattttagtattttctatcaattttgatccgtactagttgcagtcaattgcatttataattgtaacaaa |
24869571 |
T |
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| Q |
158 |
nnnntaaataattgaatttataattaagacagaaagtgcgttttatccagctgcaatttgatctctacggtaagttgttttaaaag-aaaaaatattgaa |
256 |
Q |
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| T |
24869572 |
aa---aaaaaattgaatttataattaagacagaaagtgcgttttatccagctgcaatttgatctctacggtaagttgttttaaaagaaaaaaatattgaa |
24869668 |
T |
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| Q |
257 |
tggcaaggaaattacgtcaaatccctctataattcccataatcaatcaacacaatccattttaat |
321 |
Q |
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| T |
24869669 |
tggcaaggaaattacgtcaaatccctctataattcccataatcaatcaacacaatccattttaat |
24869733 |
T |
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