View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20956_low_6 (Length: 321)

Name: NF20956_low_6
Description: NF20956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20956_low_6
NF20956_low_6
[»] chr2 (13 HSPs)
chr2 (1-321)||(9755911-9756231)
chr2 (5-197)||(9756155-9756347)
chr2 (91-197)||(9755804-9755910)
chr2 (2-103)||(9755778-9755879)
chr2 (90-197)||(9756275-9756382)
chr2 (9-105)||(9781318-9781414)
chr2 (90-197)||(9781346-9781453)
chr2 (73-279)||(9783155-9783361)
chr2 (121-288)||(9781417-9781584)
chr2 (224-290)||(9783306-9783372)
chr2 (112-206)||(9783309-9783403)
chr2 (9-78)||(9783155-9783224)
chr2 (9-70)||(9783325-9783386)


Alignment Details
Target: chr2 (Bit Score: 281; Significance: 1e-157; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 9756231 - 9755911
Alignment:
Q  1 ggtgtcgtaggatcaaccaaagatggtggtgtggaaggagctaccgtagttggtggtgtcgaagggggtgatgaaggagcatcaacagatggtggtgtgg 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  9756231 ggtgtcgtaggatcaaccaaagatggtggtgtcgaaggagctaccgtagttggtggtgtagaagggggtgatgaaggagcatcaacagatggtggtgtgg 9756132  T
Q  101 aaggagttgttgaaggtggtagtgttgtaggatcaaccacaactggtggtgtcgaaggagccattgtggttggtggtgtggaaggaggtgttgaaggcgg 200  Q
    || ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| || | ||||||||| |||||||||||||||||||||||    
T  9756131 aatgagttgttgaaggtggtagtgttgtaggatcaatcacaacttgtggtgtcgaaggagctatcgcggttggtggcgtggaaggaggtgttgaaggcgg 9756032  T
Q  201 tggtgttgatggagcatgaacaagtggtggtgtggaaggagcgaccataggtggtgtagtgaaaggaggtgtcgaaggaggtggtgtggagggagctacc 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9756031 tggtgttgatggagcatgaacaagtggtggtgtggaaggagcgaccgtaggtggtgtagtgaaaggaggtgtcgaaggaggtggtgtggagggagctacc 9755932  T
Q  301 acatttggtggtgtagaagta 321  Q
    |||||||||||||||||||||    
T  9755931 acatttggtggtgtagaagta 9755911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 5 - 197
Target Start/End: Complemental strand, 9756347 - 9756155
Alignment:
Q  5 tcgtaggatcaaccaaagatggtggtgtggaaggagctaccgtagttggtggtgtcgaagggggtgatgaaggagcatcaacagatggtggtgtggaagg 104  Q
    ||||||||| |||||  ||||||||||| ||||||||||||| | |||||||||| |||||||||| ||||||| ||| ||| | ||||||||| |||||    
T  9756347 tcgtaggattaaccacggatggtggtgtcgaaggagctaccgcaattggtggtgtggaagggggtgttgaaggatcatgaacgggtggtggtgttgaagg 9756248  T
Q  105 agttgttgaaggtggtagtgttgtaggatcaaccacaactggtggtgtcgaaggagccattgtggttggtggtgtggaaggaggtgttgaagg 197  Q
    || ||||||||||||| |||| ||||||||||||| |  |||||||||||||||||| |  || ||||||||||| ||||| |||| ||||||    
T  9756247 aggtgttgaaggtggtggtgtcgtaggatcaaccaaagatggtggtgtcgaaggagctaccgtagttggtggtgtagaagggggtgatgaagg 9756155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 91 - 197
Target Start/End: Complemental strand, 9755910 - 9755804
Alignment:
Q  91 ggtggtgtggaaggagttgttgaaggtggtagtgttgtaggatcaaccacaactggtggtgtcgaaggagccattgtggttggtggtgtggaaggaggtg 190  Q
    ||||||||||| |||| |||||||||||||||||| || ||||||||| ||||||||| |||||||||||| |  ||  |||||||||||||||| ||||    
T  9755910 ggtggtgtggatggaggtgttgaaggtggtagtgtcgttggatcaaccgcaactggtgatgtcgaaggagctaccgtaattggtggtgtggaagggggtg 9755811  T
Q  191 ttgaagg 197  Q
    |||||||    
T  9755810 ttgaagg 9755804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 2 - 103
Target Start/End: Complemental strand, 9755879 - 9755778
Alignment:
Q  2 gtgtcgtaggatcaaccaaagatggtggtgtggaaggagctaccgtagttggtggtgtcgaagggggtgatgaaggagcatcaacagatggtggtgtgga 101  Q
    ||||||| |||||||||  |  ||||| ||| ||||||||||||||| |||||||||| |||||||||| |||||||||  | |||| ||||||||||||    
T  9755879 gtgtcgttggatcaaccgcaactggtgatgtcgaaggagctaccgtaattggtggtgtggaagggggtgttgaaggagcgaccacaggtggtggtgtgga 9755780  T
Q  102 ag 103  Q
    ||    
T  9755779 ag 9755778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 90 - 197
Target Start/End: Complemental strand, 9756382 - 9756275
Alignment:
Q  90 tggtggtgtggaaggagttgttgaaggtggtagtgttgtaggatcaaccacaactggtggtgtcgaaggagccattgtggttggtggtgtggaaggaggt 189  Q
    ||||||||||| ||||| ||||||||||||| || | ||||||| ||||||   |||||||||||||||||| |  |   |||||||||||||||| |||    
T  9756382 tggtggtgtggtaggaggtgttgaaggtggtggtatcgtaggattaaccacggatggtggtgtcgaaggagctaccgcaattggtggtgtggaagggggt 9756283  T
Q  190 gttgaagg 197  Q
    ||||||||    
T  9756282 gttgaagg 9756275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 105
Target Start/End: Complemental strand, 9781414 - 9781318
Alignment:
Q  9 aggatcaaccaaagatggtggtgtggaaggagctaccgtagttggtggtgtcgaagggggtgatgaaggagcatcaacagatggtggtgtggaagga 105  Q
    ||||||||||| || |||| |||| ||||||| |||| || |||||||||| |||||||||| ||||||||||| ||| | |||||||  |||||||    
T  9781414 aggatcaaccacaggtggttgtgtcgaaggagataccataattggtggtgtggaagggggtgttgaaggagcatgaacgggtggtggtagggaagga 9781318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 90 - 197
Target Start/End: Complemental strand, 9781453 - 9781346
Alignment:
Q  90 tggtggtgtggaaggagttgttgaaggtggtagtgttgtaggatcaaccacaactggtggtgtcgaaggagccattgtggttggtggtgtggaaggaggt 189  Q
    ||||||||||||||||| ||| ||||||||| ||||   |||||||||||||  |||| ||||||||||||  |   |  |||||||||||||||| |||    
T  9781453 tggtggtgtggaaggaggtgtcgaaggtggtggtgtgaaaggatcaaccacaggtggttgtgtcgaaggagataccataattggtggtgtggaagggggt 9781354  T
Q  190 gttgaagg 197  Q
    ||||||||    
T  9781353 gttgaagg 9781346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 73 - 279
Target Start/End: Complemental strand, 9783361 - 9783155
Alignment:
Q  73 gaaggagcatcaacagatggtggtgtggaaggagttgttgaaggtggtagtgttgtaggatcaaccacaactggtggtgtcgaaggagccattgtggttg 172  Q
    ||||||||| | | || |||||| |||||||||| ||| |||| |||| |||| | |||||||||||    |||| |||||| |||||| |   | ||||    
T  9783361 gaaggagcaaccatagttggtggggtggaaggaggtgtcgaagttggtggtgtggaaggatcaaccatgggtggttgtgtcgtaggagcaaccatagttg 9783262  T
Q  173 gtggtgtggaaggaggtgttgaaggcggtggtgttgatggagcatgaacaagtggtggtgtggaaggagcgaccataggtggtgtagtgaaaggaggtgt 272  Q
    ||||||||||| | ||||||||||  |||||||| || ||| ||   ||  |||||||||| |||||||| ||||||  |||||  ||| ||||||||||    
T  9783261 gtggtgtggaaaggggtgttgaagatggtggtgtggaaggatcaaccacgggtggtggtgttgaaggagctaccataattggtggtgtggaaggaggtgt 9783162  T
Q  273 cgaagga 279  Q
     ||||||    
T  9783161 tgaagga 9783155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 121 - 288
Target Start/End: Complemental strand, 9781584 - 9781417
Alignment:
Q  121 agtgttgtaggatcaaccacaactggtggtgtcgaaggagccattgtggttggtggtgtggaaggaggtgttgaaggcggtggtgttgatggagcatgaa 220  Q
    ||||||| |||||||||||    |||||||||||| ||||| | | | |||||||| ||||| |||||||| ||||  |||| ||| || ||||||   |    
T  9781584 agtgttgaaggatcaaccatgggtggtggtgtcgatggagcaactatagttggtggcgtggatggaggtgtcgaagttggtgttgtggaaggagcaacca 9781485  T
Q  221 caagtggtggtgtggaaggagcgaccataggtggtgtagtgaaaggaggtgtcgaaggaggtggtgtg 288  Q
       ||||||| || | |||||| ||||||| |||||  ||| |||||||||||||||| |||||||||    
T  9781484 tgggtggtggcgtcgcaggagcaaccatagttggtggtgtggaaggaggtgtcgaaggtggtggtgtg 9781417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 290
Target Start/End: Complemental strand, 9783372 - 9783306
Alignment:
Q  224 gtggtggtgtggaaggagcgaccataggtggtgtagtgaaaggaggtgtcgaaggaggtggtgtgga 290  Q
    |||||||||| |||||||| ||||||| |||||  ||| |||||||||||||||  |||||||||||    
T  9783372 gtggtggtgtcgaaggagcaaccatagttggtggggtggaaggaggtgtcgaagttggtggtgtgga 9783306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 206
Target Start/End: Complemental strand, 9783403 - 9783309
Alignment:
Q  112 gaaggtggtagtgttgtaggatcaaccacaactggtggtgtcgaaggagccattgtggttggtggtgtggaaggaggtgttgaaggcggtggtgt 206  Q
    ||||| ||| |||| | |||||||||||||  |||||||||||||||||| |   | |||||||| |||||||||||||| ||||  ||||||||    
T  9783403 gaaggaggtcgtgtggaaggatcaaccacaggtggtggtgtcgaaggagcaaccatagttggtggggtggaaggaggtgtcgaagttggtggtgt 9783309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 78
Target Start/End: Complemental strand, 9783224 - 9783155
Alignment:
Q  9 aggatcaaccaaagatggtggtgtggaaggagctaccgtagttggtggtgtcgaagggggtgatgaagga 78  Q
    |||||||||||  | ||||||||| |||||||||||| || |||||||||| ||||| |||| |||||||    
T  9783224 aggatcaaccacgggtggtggtgttgaaggagctaccataattggtggtgtggaaggaggtgttgaagga 9783155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 70
Target Start/End: Complemental strand, 9783386 - 9783325
Alignment:
Q  9 aggatcaaccaaagatggtggtgtggaaggagctaccgtagttggtggtgtcgaagggggtg 70  Q
    ||||||||||| || ||||||||| |||||||| ||| |||||||||| || ||||| ||||    
T  9783386 aggatcaaccacaggtggtggtgtcgaaggagcaaccatagttggtggggtggaaggaggtg 9783325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University