View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20957_high_4 (Length: 474)
Name: NF20957_high_4
Description: NF20957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20957_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 16 - 444
Target Start/End: Original strand, 34899548 - 34899975
Alignment:
| Q |
16 |
acttacaaataattagttggtagctgaatgcagaaaattgaatatcgaaaatgtgtctctaaaaatgttcttagttattaggagaacctcaattagtggg |
115 |
Q |
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| T |
34899548 |
acttacaaataattagttggtagctgaatgcagaaaattgaatatcgaaaatgtgtctctaaaaatgttcttagttattaggagaacctcaactagtggg |
34899647 |
T |
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| Q |
116 |
tcagttgacatgttccacttggtttttatgcgtaacgtaccacacaagcatatgcaaatgttataataagataggcaagagataccaaattatcatattg |
215 |
Q |
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| T |
34899648 |
tcagttgacatgttccacttggtttttatgcgtaa-gtaccacacaagcatatgcaaatgttataataagataggcaagagataccaaattatcatattg |
34899746 |
T |
|
| Q |
216 |
tcagtgatatcatctgcacaaattcacataaaattttgtagttggaagatacatacctttcatgtttggtgagaatggaaggaaaattttgagactataa |
315 |
Q |
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| T |
34899747 |
tcagtgatatcatctgcacaaattcacataaaattttgtagttggaagatacatacctttcatgtttggtgagaatggaaggaaaattttgagactataa |
34899846 |
T |
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| Q |
316 |
ggttgcatacacgcaggggaagacacaatttagcttttgttgacatcaaatagcgagagaagaactaaagagagatgtgtttatatgcatataggtaaag |
415 |
Q |
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| T |
34899847 |
ggttgcatacacgcaggggaagacacaatttagcttttgttgacatcaaatagcgagagaagaactaaagagagatgtgtttatatgcatataggtaaag |
34899946 |
T |
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| Q |
416 |
tttggtagtttcaactttcaagttgagat |
444 |
Q |
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| T |
34899947 |
tttggtagtttcaactttcaagttgagat |
34899975 |
T |
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