View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20957_low_1 (Length: 518)
Name: NF20957_low_1
Description: NF20957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20957_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 170; Significance: 5e-91; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 86 - 488
Target Start/End: Original strand, 2783793 - 2784174
Alignment:
| Q |
86 |
gtatcttatgtacgcataagtgcaaattcgagtaaa-gttataacgagtcgcgttaccatagctcggtcagcnnnnnnnnnnnnnngtaagggttggtat |
184 |
Q |
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| T |
2783793 |
gtatcttatgtacgcataagtgcaaattcgagtaaaagttataacgagtcccg----catagctcggtcagcatat----------gtaagggttgg-at |
2783877 |
T |
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| Q |
185 |
ttaaattccaaacacctaatttattcattttaaaaagtgaattatatcaactaaattgtttgatnnnnnnnntaaatttatgatgattgataaaactctg |
284 |
Q |
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| T |
2783878 |
tgaaattccaaacacctaatttattcattttaaaaagtgaattatatcaactaaattatttgacaaaaaaaataaagttatgatgagtgataaaactctc |
2783977 |
T |
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| Q |
285 |
aaatgttataaattttagttcaaccaacaaaaatacaaaaattgttaggtcgaacttcatgatggcgttcgaacatcgacacctccacttacatgtatga |
384 |
Q |
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| T |
2783978 |
aaatgttataaattttagttcaact--------tacaaatattgttaggtcgaacttcatgatggcgttcgaacatcgacacctccacttacatgtatga |
2784069 |
T |
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| Q |
385 |
gtttataataacttacttatttcgtctatctat-nnnnnnnnnnnnnnnnnnctcccaaaacatttaacaaagtagcattatgagaagtgtataaattca |
483 |
Q |
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| T |
2784070 |
gtttataataacttacttatttcatctatctataaaaaaaaaaaaaaaaaaactcccaaaacatttaacaaagtagcattatgagaagtgtataaattca |
2784169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 323 - 417
Target Start/End: Original strand, 42650201 - 42650296
Alignment:
| Q |
323 |
aaattgttaggtcgaacttcatgat-ggcgttcgaacatcgacacctccacttacatgtatgagtttataataacttacttatttcgtctatctat |
417 |
Q |
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| T |
42650201 |
aaattgttaggtcggatgccatgattggggttcgaacctcggtacctccacttatgtgtatgagtttataatgactttatcatttcgtctatctat |
42650296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 195 - 227
Target Start/End: Complemental strand, 16777009 - 16776977
Alignment:
| Q |
195 |
aacacctaatttattcattttaaaaagtgaatt |
227 |
Q |
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| T |
16777009 |
aacaccttatttattcattttaaaaagtgaatt |
16776977 |
T |
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