View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20957_low_2 (Length: 327)

Name: NF20957_low_2
Description: NF20957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20957_low_2
NF20957_low_2
[»] scaffold0197 (1 HSPs)
scaffold0197 (3-295)||(231-526)


Alignment Details
Target: scaffold0197 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 3 - 295
Target Start/End: Complemental strand, 526 - 231
Alignment:
Q  3 attttggtttgtgttatcacatcaagtgacctagttttttaaattataaaataaatttgttaatnnnnnnn-gccatttcaacaccatttggttaacatt 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||    
T  526 attttggtttgtgttatcacatcaagtgacctagttttttaaattataaaataaatttgttaataaaaaaaagccatttcaacaccatttggttaacatt 427  T
Q  102 tgttcaaaagtaaggtaaaataaggggtctaaaatctcacatttaagattagaatggttaaaatcgcacaattagaaaattagagggtccaaattacaat 201  Q
    ||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  426 tgttcaaaagtaaggtaaaatgagggggctaaaatctcacattaaagattagaatggttaaaatcgcacaattagaaaactagagggtccaaattacaat 327  T
Q  202 taaccgttttaattat--tagccccaattaaaaacatgcaactttaaaagtattttgaattagaagttgttgtgttatataactaagttgtcacac 295  Q
    ||||||||||||||||  |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  326 taaccgttttaattattatagccccaattaaaaacatgcatctttaaaagtattttcaattagaagttgttgtgttatataactaagttgtcacac 231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University