View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20958_high_1 (Length: 750)
Name: NF20958_high_1
Description: NF20958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20958_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 703; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 703; E-Value: 0
Query Start/End: Original strand, 18 - 732
Target Start/End: Original strand, 34291514 - 34292228
Alignment:
| Q |
18 |
agatataacaacattgcgcacaatatcgtgcatcttcacagcacattgctgtccaacaacaagaactttcgtcttagatcttccaccaatgtatgcactc |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34291514 |
agatataacaacattgcgcacaatatcgtgcatcttcacagcacattgctgtccaacaacaagaactttcgtcttagatcttccaccaatgtatgcactc |
34291613 |
T |
|
| Q |
118 |
ggtttcttgctttcaatgatgcattaatgtatttgaacaatcccaagccaaaagcatgatacaataaactttcaataggaatgtcaaagtcttctggaaa |
217 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34291614 |
ggtttcttgctttcaatgatgcattaatgtatttgaacaatcccaagccaaaagcatgatacaataaactttcaataggaatgtcaaagtcttctggaaa |
34291713 |
T |
|
| Q |
218 |
taatccacaaagcataagcaagagcttatgttctttattgcccaaaaactttaaactaagctcaatccgggggtagatatgttttccaacacccaaggag |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34291714 |
taatccacaaagcataagcaagagcttatgttctttattgcccaaaaactttaaactaagctcaatccgggggtagatatgttttccaacacccaaggag |
34291813 |
T |
|
| Q |
318 |
gaagatgattgaacgtcgtttaattgtcttagtgcatcttcccatgcagacttcccttcattgctcagtgctcttccaattgtcgcaattgcaagcggta |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34291814 |
gaagatgattgaacgtcgtttaattgtcttagtgcatcttcccatgcagacttcccttcattgctcagtgctcttccaattgtcgcaattgcaagcggta |
34291913 |
T |
|
| Q |
418 |
agccaccacattcctttgcaacctcttttgctattggattgatatcttttctatctacaacttcccctgacagctctcgaaacagataccaagcttcatc |
517 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
34291914 |
agccgccacattcctttgcaacctcttttgctattggattgatatcatttctatctacaacttcccctcacagctctcgaaacagataccaagcttcatc |
34292013 |
T |
|
| Q |
518 |
ctctttcaacagaggtacttgaaaattgagttttcatcccatattttggcacactttttcatcccgtgatgtgagcaatattttgcaatatttctcatgt |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34292014 |
ctctttcaacagaggtacttgaaaattgagttttcatcccatattttggcacactttttcatcccgtgatgtgagcaatattttgcaatatttctcatgt |
34292113 |
T |
|
| Q |
618 |
tctagataaggaagtccaatacactcaaagtctagaatatcccacacatcatcaaggacaattagaacctttttatcttttctcatcagtctctcatgta |
717 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34292114 |
tctagataaggaagtccaatacactcaaagtctagaatatcccacacatcatcaaggacaattagaacctttttatcttttctcatcagtctctcatgta |
34292213 |
T |
|
| Q |
718 |
attgcatggctcttc |
732 |
Q |
| |
|
||||||||||||||| |
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|
| T |
34292214 |
attgcatggctcttc |
34292228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 19 - 720
Target Start/End: Original strand, 34566003 - 34566711
Alignment:
| Q |
19 |
gatataacaacattgcgcacaatatcgtgcatcttcaca-------gcacattgctgtccaacaacaagaactttcgtcttagatcttccaccaatgtat |
111 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||||||| ||||| |||| |||||||| || ||||||| |||||||||||||||||||||| |
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| T |
34566003 |
gatataacaacattacgcacaatatcatgcatcttcacacaccctggcacactgctatccaacaataaaaactttctccttagatcttccaccaatgtat |
34566102 |
T |
|
| Q |
112 |
gcactcggtttcttgctttcaatgatgcattaatgtatttgaacaatcccaagccaaaagcatgatacaataaactttcaataggaatgtcaaagtcttc |
211 |
Q |
| |
|
||||||| |||||||||| | |||||||| | |||| ||||||| |||||||||||| ||||| |||||||||||||||| ||||||||||||||||| |
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|
| T |
34566103 |
gcactcgatttcttgcttcccatgatgcactgatgtctttgaacggacccaagccaaaaccatgacacaataaactttcaatgggaatgtcaaagtcttc |
34566202 |
T |
|
| Q |
212 |
tggaaataatccacaaagcataagcaagagcttatgttctttattgcccaaaaactttaaactaagctcaatccgggggtagatatgttttccaacaccc |
311 |
Q |
| |
|
|||| | ||||||||||||||||| ||||||||||||||| | || ||||||||||||||||||||||||| | |||||||| | ||||||||| | |
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|
| T |
34566203 |
tggatacaatccacaaagcataaggaagagcttatgttctctgctgtccaaaaactttaaactaagctcaatgctggggtagacaaattttccaacgtct |
34566302 |
T |
|
| Q |
312 |
aaggaggaagatgattgaacgtcgtttaattgtcttagtgcatcttcccatgcagacttcccttcattgctcagtgctcttccaattgtcgcaattgcaa |
411 |
Q |
| |
|
|| ||| ||||||||||| | |||| ||||| |||||||| |||||||| |||||||||||||| || ||||||||||||| |||| ||||||||| |
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|
| T |
34566303 |
gagaagggagatgattgaaaatttcttaaatgtctaagtgcatcctcccatgccgacttcccttcattacttagtgctcttccaactgtcacaattgcaa |
34566402 |
T |
|
| Q |
412 |
gcggtaagccaccacattcctttgcaacctcttttgctattggattgatatcttttctatctacaacttcccctgacagctctcgaaacagataccaagc |
511 |
Q |
| |
|
| || |||||||||||||||||||||||||| |||||||||| |||||||| | | ||||||||| | | ||||||| ||||||||| ||||||||||| |
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|
| T |
34566403 |
gaggcaagccaccacattcctttgcaacctcacttgctattgggttgatatcatatgtatctacaattccacctgacatctctcgaaatagataccaagc |
34566502 |
T |
|
| Q |
512 |
ttcatcctctttcaacagaggtacttgaaaattgagttttcatcccatattttggcacactttttcatcccgtgatgtgagcaatattttgcaatatttc |
611 |
Q |
| |
|
|||||||| ||||| || ||||||||||| | || ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34566503 |
ctcatcctccgacaacacagaaacttgaaaattcacattgcatcccaagtttttgcacactttttcatcccgtgatgtgagcaatattttgcaatatttc |
34566602 |
T |
|
| Q |
612 |
tcatgttctagataaggaagtccaatacactcaaagtctagaatatcccacacatcatcaaggacaattagaacctttttatcttttctcatcagtctct |
711 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34566603 |
tcatgttctagataaggaagtccaatacactcaaagtctagaatatcccacacatcatcaaggacaattagaacctttttatcttttctcatcagtctct |
34566702 |
T |
|
| Q |
712 |
catgtaatt |
720 |
Q |
| |
|
||||||||| |
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|
| T |
34566703 |
catgtaatt |
34566711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 60 - 235
Target Start/End: Original strand, 34554377 - 34554552
Alignment:
| Q |
60 |
acattgctgtccaacaacaagaactttcgtcttagatcttccaccaatgtatgcactcggtttcttgctttcaatgatgcattaatgtatttgaacaatc |
159 |
Q |
| |
|
|||||||| |||||||||||||| || ||||||| ||||| || ||| ||||||||||||||||||| ||| || || ||||||||||| |
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|
| T |
34554377 |
acattgctatccaacaacaagaagcatctctttagatcgtccacaaaactattcactcggtttcttgctttccatggctcaccgatagctttgaacaatc |
34554476 |
T |
|
| Q |
160 |
ccaagccaaaagcatgatacaataaactttcaataggaatgtcaaagtcttctggaaataatccacaaagcataag |
235 |
Q |
| |
|
||||||| | || ||| | ||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||| |
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|
| T |
34554477 |
ccaagcccattgcgtgacataataaactttcaataggtatgtcaaagtcttccggaaacaatccacaaagcataag |
34554552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 384 - 463
Target Start/End: Complemental strand, 34371825 - 34371746
Alignment:
| Q |
384 |
agtgctcttccaattgtcgcaattgcaagcggtaagccaccacattcctttgcaacctcttttgctattggattgatatc |
463 |
Q |
| |
|
||||||| ||||| ||| ||||||||||| || || |||||||||||| |||||||||| ||||||||||||||||||| |
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|
| T |
34371825 |
agtgctcgtccaactgttgcaattgcaaggggcaaaccaccacattcccttgcaacctcacttgctattggattgatatc |
34371746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 229
Target Start/End: Complemental strand, 34372020 - 34371977
Alignment:
| Q |
186 |
ctttcaataggaatgtcaaagtcttctggaaataatccacaaag |
229 |
Q |
| |
|
||||| ||||||||||||||||| |||||||| ||||||||||| |
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|
| T |
34372020 |
ctttctataggaatgtcaaagtcctctggaaacaatccacaaag |
34371977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 403 - 456
Target Start/End: Original strand, 34554723 - 34554776
Alignment:
| Q |
403 |
caattgcaagcggtaagccaccacattcctttgcaacctcttttgctattggat |
456 |
Q |
| |
|
|||| ||||| || ||||| ||||||||||||||||| | |||||||||||||| |
|
|
| T |
34554723 |
caatagcaagaggcaagcctccacattcctttgcaacttgttttgctattggat |
34554776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 19 - 667
Target Start/End: Original strand, 15895693 - 15896342
Alignment:
| Q |
19 |
gatataacaacattgcgcacaatatcgtgcatcttcaca-------gcacattgctgtccaacaacaagaactttcgtcttagatcttccaccaatgtat |
111 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||| ||| ||||||| || |||| |||||| ||||||| |||||| || |||||||||| |
|
|
| T |
15895693 |
gatataacaacatttcgcacaatatcatgcatctttacacatcctcgcacattactttccagcaacaaaaactttctctttagattatctaccaatgtat |
15895792 |
T |
|
| Q |
112 |
gcactcggtttcttgctttcaatgatgcattaatgtatttgaacaatcccaagccaaaagcatgatacaataaactttcaataggaatgtcaaagtcttc |
211 |
Q |
| |
|
||||| ||| |||||||| | |||||||| |||||| |||||||| |||||| || | ||||||| ||| |||| |||||||||||| ||||||||||| |
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|
| T |
15895793 |
gcacttggtctcttgcttcccatgatgcagtaatgtgtttgaacattcccaaacccactgcatgatgcaacaaacattcaataggaatatcaaagtcttc |
15895892 |
T |
|
| Q |
212 |
tggaaataatccacaaagcataagcaagagcttatgttctttattgcccaaaaactttaaactaagctcaatccgggggtagatatgttttccaacaccc |
311 |
Q |
| |
|
||||| ||||||||||||||||| || ||||| | |||||| || |||||||||||||||||||||||||| || |||| || | |||| ||||| | |
|
|
| T |
15895893 |
aggaaacaatccacaaagcataaggaatagcttgtattctttgtttcccaaaaactttaaactaagctcaatgcgagggtggacaaatttttcaacatct |
15895992 |
T |
|
| Q |
312 |
aaggaggaagatgattgaacgtcgtttaattgtcttagtgcatcttcccatgcagacttcccttcattgctcagtgctcttccaattgtcgcaattgcaa |
411 |
Q |
| |
|
| |||||||||||||||| | |||||||| | |||| |||||||||||||||||||||||| |||| ||||||||||||| |||| ||||||||| |
|
|
| T |
15895993 |
gacgaggaagatgattgaaaatttcttaattgtttaagtgtgtcttcccatgcagacttcccttcaatgcttagtgctcttccaactgtcacaattgcaa |
15896092 |
T |
|
| Q |
412 |
gcggtaagccaccacattcctttgcaacctcttttgctattggattgatatcttttctatctacaacttcccctgacagctctcgaaacagataccaagc |
511 |
Q |
| |
|
| || |||||||||||| |||||||||||||| ||||||||||||||||||| | | | | |||||| || |||| || ||| |||| || |||||| |
|
|
| T |
15896093 |
ggggcaagccaccacatgcctttgcaacctctcttgctattggattgatatcatgtttgtttacaacatctcctgccatttcttgaaataggctccaagc |
15896192 |
T |
|
| Q |
512 |
ttcatcctctttcaacagaggtacttgaaaattgagttttcatcccatattttggcacactttttcatcccgtgatgtgagcaatattttgcaatatttc |
611 |
Q |
| |
|
||||||||| ||| | ||| ||||||||||| | | | ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |
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|
| T |
15896193 |
ttcatcctccgacaatacagggacttgaaaattcactctgcatcccatattttggcacactttttgatcccgtgatgtgaacaatattttgcaatattta |
15896292 |
T |
|
| Q |
612 |
tcatgttctagataaggaagtccaatacactcaaagtctagaatatcccacacatc |
667 |
Q |
| |
|
||| ||||| |||||||||||| |||||| || ||||||||||||||||| |
|
|
| T |
15896293 |
tcacgttct------tgaagtccaatacgctcaaaatcaagaatatcccacacatc |
15896342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 6e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 60 - 235
Target Start/End: Complemental strand, 130419 - 130244
Alignment:
| Q |
60 |
acattgctgtccaacaacaagaactttcgtcttagatcttccaccaatgtatgcactcggtttcttgctttcaatgatgcattaatgtatttgaacaatc |
159 |
Q |
| |
|
||||||||||||||||||||||| || ||||||| ||||||| || ||||||| |||||||||||||||| || || | ||||||||||| |
|
|
| T |
130419 |
acattgctgtccaacaacaagaaacatctctttagatcgcccaccaaactacgcactcgatttcttgctttcaatggctcaccaacggctttgaacaatc |
130320 |
T |
|
| Q |
160 |
ccaagccaaaagcatgatacaataaactttcaataggaatgtcaaagtcttctggaaataatccacaaagcataag |
235 |
Q |
| |
|
||||||| | |||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
130319 |
ccaagcctattgcatgacgcaataaaatttcaataggaatatcaaagtcttctggaaataatccacaaagcataag |
130244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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