View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20958_high_4 (Length: 270)
Name: NF20958_high_4
Description: NF20958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20958_high_4 |
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| [»] scaffold0159 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 135 - 252
Target Start/End: Original strand, 48552617 - 48552735
Alignment:
| Q |
135 |
aaattattttcacacaaaattcaattgtgtcctcctttactgtgttaacctataaatgt-aaattttacaatttcacatttctaatcaattgtaattatt |
233 |
Q |
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| T |
48552617 |
aaattattttcacacaaaattcaattgtgtcctccttcactgtgttaacctataaatgtcaaattttacaatatcacatttctaatcaattgtaattatt |
48552716 |
T |
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| Q |
234 |
aattattttacagaaatgt |
252 |
Q |
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| T |
48552717 |
aattattttatagaaatgt |
48552735 |
T |
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Target: scaffold0159 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0159
Description:
Target: scaffold0159; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 222
Target Start/End: Original strand, 29960 - 30039
Alignment:
| Q |
143 |
ttcacacaaaattcaattgtgtcctcctttactgtgttaacctataaatgtaaattttacaatttcacatttctaatcaa |
222 |
Q |
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| T |
29960 |
ttcactcaatattcaattgcatcatcattcactatgttaaccaataaatgtaaattttacaatatcatatttctaatcaa |
30039 |
T |
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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 222
Target Start/End: Original strand, 5785587 - 5785666
Alignment:
| Q |
143 |
ttcacacaaaattcaattgtgtcctcctttactgtgttaacctataaatgtaaattttacaatttcacatttctaatcaa |
222 |
Q |
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| T |
5785587 |
ttcactcaatattcaattgcatcatcattcactatgttaaccaataaatgtaaattttacaatatcatatttctaatcaa |
5785666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 222
Target Start/End: Original strand, 12576221 - 12576305
Alignment:
| Q |
138 |
ttattttcacacaaaattcaattgtgtcctcctttactgtgttaacctataaatgtaaattttacaatttcacatttctaatcaa |
222 |
Q |
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| T |
12576221 |
ttatcttcactcaaaattcaattgtgacttcattcactatgataacatagaaatgtaaattttacaaaatcatatttctaatcaa |
12576305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 193
Target Start/End: Original strand, 9611034 - 9611086
Alignment:
| Q |
141 |
ttttcacacaaaattcaattgtgtcctcctttactgtgttaacctataaatgt |
193 |
Q |
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| T |
9611034 |
ttttcactcaaaattcaattgtgtcatcattcactatgttaacctataaatgt |
9611086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 143 - 216
Target Start/End: Original strand, 38012225 - 38012298
Alignment:
| Q |
143 |
ttcacacaaaattcaattgtgtcctcctttactgtgttaacctataaatgtaaattttacaatttcacatttct |
216 |
Q |
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||||| ||||||||| |||||| || || | | |||||| |||||||||||||||||||||| ||| |||||| |
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| T |
38012225 |
ttcactcaaaattcatttgtgttatcattcattttgttaatctataaatgtaaattttacaatatcatatttct |
38012298 |
T |
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