View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20958_high_7 (Length: 212)
Name: NF20958_high_7
Description: NF20958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20958_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 151; Significance: 4e-80; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 20 - 206
Target Start/End: Complemental strand, 4090911 - 4090725
Alignment:
| Q |
20 |
actcgcaatggtctacaatgagaaataccatattatcagtataccaaccatcacatttagccaactcagtgcctaaaatgcaatcatttatcgaatcagc |
119 |
Q |
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|||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |||||||| |
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| T |
4090911 |
actcacaatggtctacgatgagaaataccatattatcagtataccaaccatcacacttagccaacttagtgcctaaaatgcaatcatttattgaatcagc |
4090812 |
T |
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| Q |
120 |
aacccaaaatcttgatgacacctcaaaagaagacataaaattttcaaatctttccctaagactagcaactgatattcttggacatgc |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||| |||| |
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| T |
4090811 |
aacccaaaatcttgatgacacctcaaaagaagacataatattttcaaatctttccctaagactagcaactgatgttattggagatgc |
4090725 |
T |
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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 134
Target Start/End: Original strand, 48182765 - 48182874
Alignment:
| Q |
25 |
caatggtctacaatgagaaataccatattatcagtataccaaccatcacatttagccaactcagtgcctaaaatgcaatcatttatcgaatcagcaaccc |
124 |
Q |
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|||||||||||||||||||| |||||||| || ||||| ||||||||||| || | | | |||||| | |||||||||||| || ||||| || || | |
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| T |
48182765 |
caatggtctacaatgagaaacaccatattgtcggtatatcaaccatcacacctatcaagattagtgccaacaatgcaatcattcatagaatctgccactc |
48182864 |
T |
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| Q |
125 |
aaaatcttga |
134 |
Q |
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| T |
48182865 |
aaaatcttga |
48182874 |
T |
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