View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20958_low_2 (Length: 617)

Name: NF20958_low_2
Description: NF20958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20958_low_2
NF20958_low_2
[»] chr6 (21 HSPs)
chr6 (385-602)||(5692017-5692234)
chr6 (383-598)||(5133815-5134030)
chr6 (389-590)||(5148877-5149081)
chr6 (383-598)||(5075641-5075856)
chr6 (383-598)||(5368337-5368552)
chr6 (383-557)||(5423630-5423804)
chr6 (383-598)||(5394920-5395135)
chr6 (404-598)||(5183862-5184056)
chr6 (385-598)||(5356526-5356739)
chr6 (383-471)||(5069108-5069196)
chr6 (383-471)||(5348288-5348376)
chr6 (385-466)||(5262185-5262266)
chr6 (385-466)||(5286165-5286246)
chr6 (383-598)||(5104782-5104997)
chr6 (385-598)||(5159411-5159624)
chr6 (391-596)||(5341579-5341784)
chr6 (383-471)||(5093918-5094006)
chr6 (385-465)||(5444962-5445042)
chr6 (385-471)||(5431286-5431372)
chr6 (406-567)||(5174766-5174927)
chr6 (383-583)||(5381522-5381722)
[»] chr3 (2 HSPs)
chr3 (237-408)||(10987130-10987301)
chr3 (85-169)||(10987369-10987453)
[»] chr7 (3 HSPs)
chr7 (237-408)||(1973585-1973756)
chr7 (476-587)||(36215813-36215924)
chr7 (85-151)||(1973855-1973920)
[»] chr8 (2 HSPs)
chr8 (237-408)||(41867380-41867548)
chr8 (85-151)||(41867647-41867713)
[»] chr5 (2 HSPs)
chr5 (237-408)||(43285436-43285607)
chr5 (85-142)||(43285718-43285775)
[»] chr4 (14 HSPs)
chr4 (383-557)||(4126388-4126562)
chr4 (385-557)||(4342821-4342993)
chr4 (385-599)||(25567882-25568094)
chr4 (385-557)||(4330368-4330540)
chr4 (385-471)||(4358289-4358375)
chr4 (385-598)||(4333431-4333644)
chr4 (389-464)||(4351114-4351189)
chr4 (385-471)||(4323139-4323225)
chr4 (383-471)||(6750702-6750790)
chr4 (375-450)||(6834021-6834096)
chr4 (385-471)||(6535676-6535762)
chr4 (393-471)||(6672520-6672598)
chr4 (383-450)||(6756320-6756387)
chr4 (383-471)||(6725785-6725873)
[»] chr2 (1 HSPs)
chr2 (385-477)||(22586346-22586438)


Alignment Details
Target: chr6 (Bit Score: 218; Significance: 1e-119; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 385 - 602
Target Start/End: Complemental strand, 5692234 - 5692017
Alignment:
Q  385 aaaaccaccattgcaaaagccatttacaataaaattggccgcaattttgaaggaaggagcttccttgcaaatataagggaagtttggatgcaaaatgttg 484  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5692234 aaaaccaccattgcaaaagccatttacaataaaattggccgcaattttgaaggaaggagcttccttgcaaatataagggaagtttggatgcaaaatgttg 5692135  T
Q  485 gacaagtatctttacagcaacaacttctctccgatatttgcaaagaaacaacgaccaatatacaaaacattgatgcaggaaaaaatacattaatggatag 584  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5692134 gacaagtatctttacagcaacaacttctctccgatatttgcaaagaaacaacgaccaatatacaaaacattgatgcaggaaaaaatacattaatggatag 5692035  T
Q  585 actctgccataaaaaggt 602  Q
    ||||||||||||||||||    
T  5692034 actctgccataaaaaggt 5692017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 383 - 598
Target Start/End: Complemental strand, 5134030 - 5133815
Alignment:
Q  383 gtaaaaccaccattgcaaaagccatttacaataaaattggccgcaattttgaaggaaggagcttccttgcaaatataagggaagtttggatgcaaaatgt 482  Q
    ||||||| |||||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||  || |||| |    
T  5134030 gtaaaacaaccattgcgaaagccatttacaataaaattggccgcgattttgaaggtaggagcttccttgcaaatattagggaagtttgggagcgaaattt 5133931  T
Q  483 tggacaagtatctttacagcaacaacttctctccgatatttgcaaagaaacaacgaccaatatacaaaacattgatgcaggaaaaaatacattaatggat 582  Q
    ||| |||||    |||||  |||||||||| |  |||||   ||||||||  || || || ||||||||||||||  ||||||||||||  |||| ||||    
T  5133930 tggtcaagtggaattacaagaacaacttctgtttgatatcaacaaagaaatgacaactaagatacaaaacattgagtcaggaaaaaatattttaaaggat 5133831  T
Q  583 agactctgccataaaa 598  Q
    |||||||| |||||||    
T  5133830 agactctggcataaaa 5133815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 389 - 590
Target Start/End: Complemental strand, 5149081 - 5148877
Alignment:
Q  389 ccaccattgcaaaagccatttacaataaaattggccgcaattttgaaggaaggagcttccttgcaaatataagggaagtttggatgcaaaatgttggaca 488  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||| || || | |||||| ||||| ||||||  | |||||| ||||||    
T  5149081 ccaccattgcaaaagccatctacaataaaattggccgcaatttcgaaggtaggagttttctaggaaatattagggaggtttgggcgaaaaatgatggaca 5148982  T
Q  489 agtatctttacagcaacaacttctctccgatatttgcaaagaaacaacg---accaatatacaaaacattgatgcaggaaaaaatacattaatggataga 585  Q
     || |||||||| |||||||||||||  ||||||||||| ||||| |||   ||||  ||||||  |||||| ||||||||| ||||||||| |||||||    
T  5148981 tgtgtctttacaacaacaacttctctttgatatttgcaaggaaacgacgacaaccatgatacaatgcattgaggcaggaaaacatacattaaaggataga 5148882  T
Q  586 ctctg 590  Q
    |||||    
T  5148881 ctctg 5148877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 383 - 598
Target Start/End: Complemental strand, 5075856 - 5075641
Alignment:
Q  383 gtaaaaccaccattgcaaaagccatttacaataaaattggccgcaattttgaaggaaggagcttccttgcaaatataagggaagtttggatgcaaaatgt 482  Q
    |||||||||||||||||||||||||||||||||||||||| || || |||| ||| |||||||||||||||||||| ||||||||||||  ||||||||     
T  5075856 gtaaaaccaccattgcaaaagccatttacaataaaattggtcgtaaatttgcaggtaggagcttccttgcaaatatcagggaagtttgggagcaaaatga 5075757  T
Q  483 tggacaagtatctttacagcaacaacttctctccgatatttgcaaagaaacaacgaccaatatacaaaacattgatgcaggaaaaaatacattaatggat 582  Q
    |||||  || | ||||||  |||||||||| |  |||||||||||||| || |  || || |||| ||  |||||  | ||||||| || ||||||||||    
T  5075756 tggaccggtttgtttacaagaacaacttctttttgatatttgcaaagatacgaaaactaagatacgaagtattgagtcgggaaaaactatattaatggat 5075657  T
Q  583 agactctgccataaaa 598  Q
    ||||| || |||||||    
T  5075656 agactatgtcataaaa 5075641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 383 - 598
Target Start/End: Original strand, 5368337 - 5368552
Alignment:
Q  383 gtaaaaccaccattgcaaaagccatttacaataaaattggccgcaattttgaaggaaggagcttccttgcaaatataagggaagtttggatgcaaaatgt 482  Q
    ||||||| |||||||| ||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||  | ||||||     
T  5368337 gtaaaacaaccattgccaaagctatttacaataaaattggccgcaattttgaaggtagaagcttccttgcaaatattagggaagtttgggaggaaaatgc 5368436  T
Q  483 tggacaagtatctttacagcaacaacttctctccgatatttgcaaagaaacaacgaccaatatacaaaacattg-atgcaggaaaaaatacattaatgga 581  Q
    |||| ||||   ||||||  ||||||||||||  ||||| |||||||| |   | ||||| || |||| ||||| |||| |||||||  | ||||| |||    
T  5368437 tggaaaagtgaatttacaagaacaacttctctttgatatctgcaaagatatggcaaccaaaattcaaagcattgaatgc-ggaaaaatcatattaaagga 5368535  T
Q  582 tagactctgccataaaa 598  Q
    |||||||||||||||||    
T  5368536 tagactctgccataaaa 5368552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 383 - 557
Target Start/End: Original strand, 5423630 - 5423804
Alignment:
Q  383 gtaaaaccaccattgcaaaagccatttacaataaaattggccgcaattttgaaggaaggagcttccttgcaaatataagggaagtttggatgcaaaatgt 482  Q
    ||||||| |||||||| ||||| ||||||||||||||||| |||||||||||||| || ||||||||||||||||| ||||||||||||  | ||||||     
T  5423630 gtaaaacaaccattgccaaagctatttacaataaaattggtcgcaattttgaaggtagaagcttccttgcaaatattagggaagtttgggaggaaaatgc 5423729  T
Q  483 tggacaagtatctttacagcaacaacttctctccgatatttgcaaagaaacaacgaccaatatacaaaacattga 557  Q
    |||| ||||   ||||||  ||||||||||||  ||||| |||||||| |  || ||||| ||||||| ||||||    
T  5423730 tggaaaagtgaatttacaagaacaacttctctttgatatatgcaaagatatgacaaccaaaatacaaagcattga 5423804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 383 - 598
Target Start/End: Original strand, 5394920 - 5395135
Alignment:
Q  383 gtaaaaccaccattgcaaaagccatttacaataaaattggccgcaattttgaaggaaggagcttccttgcaaatataagggaagtttggatgcaaaatgt 482  Q
    ||||||||||| | || |||||||| ||||| | |||||| ||||||||||| || |||||||||||||||||||| |||||||| |||  |||||||||    
T  5394920 gtaaaaccaccttagccaaagccatatacaacagaattggtcgcaattttgagggtaggagcttccttgcaaatattagggaagtgtgggagcaaaatgt 5395019  T
Q  483 tggacaagtatctttacagcaacaacttctctccgatatttgcaaagaaacaacgaccaatatacaaaacattgatgcaggaaaaaatacattaatggat 582  Q
    |||||  ||    |||||  ||||||||||||  ||||||||||||||||| | ||| || ||||||||||||||  |||| |||| || | ||| || |    
T  5395020 tggaccggttgacttacaaaaacaacttctctttgatatttgcaaagaaacgaagactaagatacaaaacattgagtcagggaaaagtatactaaagggt 5395119  T
Q  583 agactctgccataaaa 598  Q
    ||| ||| ||||||||    
T  5395120 agattcttccataaaa 5395135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 404 - 598
Target Start/End: Complemental strand, 5184056 - 5183862
Alignment:
Q  404 ccatttacaataaaattggccgcaattttgaaggaaggagcttccttgcaaatataagggaagtttggatgcaaaatgttggacaagtatctttacagca 503  Q
    ||||||||||| ||||||| ||||||||||| || |||||||||||||||||||| ||||||||||||  |||||||||||||| | ||| ||||||  |    
T  5184056 ccatttacaatgaaattggtcgcaattttgagggtaggagcttccttgcaaatattagggaagtttgggagcaaaatgttggaccaatatatttacaaaa 5183957  T
Q  504 acaacttctctccgatatttgcaaagaaacaacgaccaatatacaaaacattgatgcaggaaaaaatacattaatggatagactctgccataaaa 598  Q
    |||| ||||||  ||||| ||||| ||||| |  || |  ||||||||| ||||  |||| |||| || | ||| ||||||||||| ||||||||    
T  5183956 acaaattctctttgatatatgcaatgaaacgaaaactaggatacaaaacgttgagtcagggaaaagtatactaaaggatagactcttccataaaa 5183862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 385 - 598
Target Start/End: Complemental strand, 5356739 - 5356526
Alignment:
Q  385 aaaaccaccattgcaaaagccatttacaataaaattggccgcaattttgaaggaaggagcttccttgcaaatataagggaagtttggatgcaaaatgttg 484  Q
    ||||| ||||| | |||||| ||||||||||||||||||||| ||||||| || || ||||||||||||||||| ||||||||||||  | |||| | ||    
T  5356739 aaaacaaccatcggaaaagctatttacaataaaattggccgcgattttgatggtagaagcttccttgcaaatattagggaagtttgggaggaaaaagctg 5356640  T
Q  485 gacaagtatctttacagcaacaacttctctccgatatttgcaaagaaacaacgaccaatatacaaaacattgatgcaggaaaaaatacattaatggatag 584  Q
    | |||||   ||||||  ||||||||||||| ||||| |||||||| || || ||||| ||||||| ||||||    |||||||  | ||||| ||||||    
T  5356639 gccaagtgaatttacaagaacaacttctctctgatatctgcaaagacacgacaaccaaaatacaaagcattgaaaatggaaaaatcatattaaaggatag 5356540  T
Q  585 actctgccataaaa 598  Q
    ||| || |||||||    
T  5356539 actttgtcataaaa 5356526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 383 - 471
Target Start/End: Complemental strand, 5069196 - 5069108
Alignment:
Q  383 gtaaaaccaccattgcaaaagccatttacaataaaattggccgcaattttgaaggaaggagcttccttgcaaatataagggaagtttgg 471  Q
    ||||||| |||||||| ||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||    
T  5069196 gtaaaacgaccattgccaaagctatttacaataaaattggccgcaattttgaaggtagaagcttccttgcaaatattagggaagtttgg 5069108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 383 - 471
Target Start/End: Original strand, 5348288 - 5348376
Alignment:
Q  383 gtaaaaccaccattgcaaaagccatttacaataaaattggccgcaattttgaaggaaggagcttccttgcaaatataagggaagtttgg 471  Q
    ||||||| |||||||| ||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||    
T  5348288 gtaaaacgaccattgccaaagctatttacaataaaattggccgcaattttgaaggtagaagcttccttgcaaatattagggaagtttgg 5348376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 385 - 466
Target Start/End: Complemental strand, 5262266 - 5262185
Alignment:
Q  385 aaaaccaccattgcaaaagccatttacaataaaattggccgcaattttgaaggaaggagcttccttgcaaatataagggaag 466  Q
    ||||| |||||| | ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  5262266 aaaacaaccattacgaaagccatttacaataagattggccgcaattttgatggaaggagcttccttgcaaatataagggaag 5262185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 385 - 466
Target Start/End: Complemental strand, 5286246 - 5286165
Alignment:
Q  385 aaaaccaccattgcaaaagccatttacaataaaattggccgcaattttgaaggaaggagcttccttgcaaatataagggaag 466  Q
    ||||| |||||| ||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||    
T  5286246 aaaacaaccattacaaaagccatttacaataagattggccgcaattttgatggtaggagcttccttgcaaatataagggaag 5286165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 383 - 598
Target Start/End: Complemental strand, 5104997 - 5104782
Alignment:
Q  383 gtaaaaccaccattgcaaaagccatttacaataaaattggccgcaattttgaaggaaggagcttccttgcaaatataagggaagtttggatgcaaaatgt 482  Q
    ||||||| |||||||| ||||| |||||||||||||||||||  |||||||| || || ||||||||||||||||| ||||||||||||  |||||||||    
T  5104997 gtaaaacaaccattgccaaagctatttacaataaaattggccataattttgatggtagaagcttccttgcaaatattagggaagtttgggagcaaaatgt 5104898  T
Q  483 tggacaagtatctttacagcaacaacttctctccgatatttgcaaagaaacaacgaccaatatacaaaacattgatgcaggaaaaaatacattaatggat 582  Q
    ||| |  ||   ||||||  || |||||||||  ||||| ||||||||||  || |  || |||||||   ||||    |||||||| | ||||| ||||    
T  5104897 tggccgggtgaatttacaagaaaaacttctctttgatatctgcaaagaaatgacaataaaaatacaaagtgttgaaaacggaaaaaacatattaaaggat 5104798  T
Q  583 agactctgccataaaa 598  Q
    ||||||||||||||||    
T  5104797 agactctgccataaaa 5104782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 385 - 598
Target Start/End: Complemental strand, 5159624 - 5159411
Alignment:
Q  385 aaaaccaccattgcaaaagccatttacaataaaattggccgcaattttgaaggaaggagcttccttgcaaatataagggaagtttgg-atgcaaaatgtt 483  Q
    ||||| |||||||||||||| || || ||| |||||||||| ||||||||||| |||||||||||||||||| | |||||||||||| ||| | |||| |    
T  5159624 aaaacaaccattgcaaaagctatctataatgaaattggccgtaattttgaaggtaggagcttccttgcaaatgttagggaagtttgggatg-agaatgct 5159526  T
Q  484 ggacaagtatctttacagcaacaacttctctccgatatttgcaaagaaacaacgaccaatatacaaaacattgatgcaggaaaaaatacattaatggata 583  Q
    ||| ||||   ||||||| ||||||||||||  || || | |||||| |  |||| ||| ||||||| ||||||    |||||||  | ||||| |||||    
T  5159525 ggaaaagtgaatttacaggaacaacttctctttgacatctacaaagatatgacgatcaaaatacaaagcattgaaagtggaaaaatcatattaaaggata 5159426  T
Q  584 gactctgccataaaa 598  Q
    |||||||||||||||    
T  5159425 gactctgccataaaa 5159411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 391 - 596
Target Start/End: Original strand, 5341579 - 5341784
Alignment:
Q  391 accattgcaaaagccatttacaataaaattggccgcaattttgaaggaaggagcttccttgcaaatataagggaagtttggatgcaaaatgttggacaag 490  Q
    |||||||  ||||||||||| |||||| |||||| ||| |||||||| ||||| |||||||||||||| ||||||||||||  ||||   | ||||||      
T  5341579 accattgtgaaagccatttataataaacttggccacaactttgaaggtaggagtttccttgcaaatattagggaagtttgggagcaaccggatggacagt 5341678  T
Q  491 tatctttacagcaacaacttctctccgatatttgcaaagaaacaacgaccaatatacaaaacattgatgcaggaaaaaatacattaatggatagactctg 590  Q
    |   ||||||  ||| |||||| | |||||| |||||||||||||| || || ||||||||||||||  | ||||||  || ||||| ||||||||||||    
T  5341679 tgcatttacaagaacgacttcttttcgatatctgcaaagaaacaacaacaaagatacaaaacattgagtcgggaaaagttatattaaaggatagactctg 5341778  T
Q  591 ccataa 596  Q
     |||||    
T  5341779 tcataa 5341784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 383 - 471
Target Start/End: Original strand, 5093918 - 5094006
Alignment:
Q  383 gtaaaaccaccattgcaaaagccatttacaataaaattggccgcaattttgaaggaaggagcttccttgcaaatataagggaagtttgg 471  Q
    ||||||| |||||||||||||| || || ||| |||||||||| ||||||||||| |||||||||||||||||| | ||||||||||||    
T  5093918 gtaaaacaaccattgcaaaagctatctataatgaaattggccgtaattttgaaggtaggagcttccttgcaaatgttagggaagtttgg 5094006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 385 - 465
Target Start/End: Original strand, 5444962 - 5445042
Alignment:
Q  385 aaaaccaccattgcaaaagccatttacaataaaattggccgcaattttgaaggaaggagcttccttgcaaatataagggaa 465  Q
    ||||| || ||||||||||||||||||||||| | |||||||||||||||||| ||||||||||| |||||||| ||||||    
T  5444962 aaaacaacaattgcaaaagccatttacaataagactggccgcaattttgaaggcaggagcttcctcgcaaatattagggaa 5445042  T

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Target: chr6; HSP #19
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 385 - 471
Target Start/End: Original strand, 5431286 - 5431372
Alignment:
Q  385 aaaaccaccattgcaaaagccatttacaataaaattggccgcaattttgaaggaaggagcttccttgcaaatataagggaagtttgg 471  Q
    ||||| || ||||||||||| ||||| ||| |||| |||||||| |||||||| ||||| |||||||||||| | ||||||||||||    
T  5431286 aaaacaactattgcaaaagcaatttataatgaaatcggccgcaagtttgaagggaggagtttccttgcaaatgttagggaagtttgg 5431372  T

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Target: chr6; HSP #20
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 406 - 567
Target Start/End: Original strand, 5174766 - 5174927
Alignment:
Q  406 atttacaataaaattggccgcaattttgaaggaaggagcttccttgcaaatataagggaagtttggatgcaaaatgttggacaagtatctttacagcaac 505  Q
    |||| ||| ||||| || || ||||||||||| ||||||||| || | ||||| ||||||||||||  ||||  || |||||||||   |||||| ||||    
T  5174766 attttcaacaaaatcggtcgtaattttgaaggtaggagcttcattcccaatattagggaagtttgggggcaacctgctggacaagtggatttacaacaac 5174865  T
Q  506 aacttctctccgatatttgcaaagaaacaacgaccaatatacaaaacattgatgcaggaaaa 567  Q
    ||||||| || ||||| |  |||| |||  ||||||| |||||||  |||||| ||||||||    
T  5174866 aacttctatctgatatctttaaaggaacgtcgaccaagatacaaagtattgattcaggaaaa 5174927  T

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Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 383 - 583
Target Start/End: Original strand, 5381522 - 5381722
Alignment:
Q  383 gtaaaaccaccattgcaaaagccatttacaataaaattggccgcaattttgaaggaaggagcttccttgcaaatataagggaagtttggatgcaaaatgt 482  Q
    ||||||| ||||||||||||||| ||||||| |||||  | ||||| ||   ||| ||||  |||||||||||||| ||||||   |||  ||| | ||     
T  5381522 gtaaaacaaccattgcaaaagccgtttacaacaaaatctgtcgcaacttcagaggtaggactttccttgcaaatattagggaaacatgggagcatactga 5381621  T
Q  483 tggacaagtatctttacagcaacaacttctctccgatatttgcaaagaaacaacgaccaatatacaaaacattgatgcaggaaaaaatacattaatggat 582  Q
    |||| |||| ||||||||  |||||||||| |  ||| | | |||| ||||||| || || |||| |||||| ||  | || ||||||||||||| ||||    
T  5381622 tggaaaagtgtctttacaagaacaacttctgtttgatgtcttcaaaaaaacaactacaaagataccaaacatcgagtctgggaaaaatacattaaaggat 5381721  T
Q  583 a 583  Q
    |    
T  5381722 a 5381722  T

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Target: chr3 (Bit Score: 156; Significance: 1e-82; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 237 - 408
Target Start/End: Complemental strand, 10987301 - 10987130
Alignment:
Q  237 tgaaccattgttcgaacgactccgacccagaacactcgacaaggttgtcagacaggatcatctcttatcatcaaactcaattcttcgttaatcaattcaa 336  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||    
T  10987301 tgaaccattgttcgaacgactccgacccagaacactcgacaaggttgtcagacaagatcatctcttattatcaaactcaattcttcgttaatcaattcaa 10987202  T
Q  337 cacaaacgtttaccttcaatcctctagtggggtccactgggtacaagtaaaaccaccattgcaaaagccatt 408  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  10987201 cacaaacgtttaccttcaatcctctagtggggtccatcgggtacaagtaaaaccaccattgcaaaagccatt 10987130  T

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Target: chr3; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 85 - 169
Target Start/End: Complemental strand, 10987453 - 10987369
Alignment:
Q  85 acccaaactcgattgtttcttccaaaccccacaacaacccattcaagcataacaacaagaccaaacaaacgcattaagctatcac 169  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10987453 acccaaactcgattgtttcttccaaaccccacaacaacccattcaagcataacaacaagaccaaacaaacgcattaagctatcac 10987369  T

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Target: chr7 (Bit Score: 152; Significance: 3e-80; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 237 - 408
Target Start/End: Complemental strand, 1973756 - 1973585
Alignment:
Q  237 tgaaccattgttcgaacgactccgacccagaacactcgacaaggttgtcagacaggatcatctcttatcatcaaactcaattcttcgttaatcaattcaa 336  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  1973756 tgaaccattgctcgaacgactccgacccagaacactcgacaaggttgtcagacaagatcatctcttatcatcaaactcaattcttcgttaatcaattcaa 1973657  T
Q  337 cacaaacgtttaccttcaatcctctagtggggtccactgggtacaagtaaaaccaccattgcaaaagccatt 408  Q
    | ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  1973656 cgcaaacgtctaccttcaatcctctagtggggtccaccgggtacaagtaaaaccaccattgcaaaagccatt 1973585  T

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Target: chr7; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 476 - 587
Target Start/End: Complemental strand, 36215924 - 36215813
Alignment:
Q  476 aaaatgttggacaagtatctttacagcaacaacttctctccgatatttgcaaagaaacaacgaccaatatacaaaacattgatgcaggaaaaaatacatt 575  Q
    |||||||||||||||| |||||||| |||||||||||||  ||||||||||||||||| || ||||| |||||||  ||||| |||||||||| || |||    
T  36215924 aaaatgttggacaagtgtctttacaacaacaacttctctttgatatttgcaaagaaacgacaaccaaaatacaaagtattgaggcaggaaaaattatatt 36215825  T
Q  576 aatggatagact 587  Q
    ||  ||||||||    
T  36215824 aaaagatagact 36215813  T

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Target: chr7; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 85 - 151
Target Start/End: Complemental strand, 1973920 - 1973855
Alignment:
Q  85 acccaaactcgattgtttcttccaaaccccacaacaacccattcaagcataacaacaagaccaaaca 151  Q
    ||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||    
T  1973920 acccaaactcgatcgtttcttccaaaccccaca-caaaccattcaagcataacaacaagaccaaaca 1973855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 138; Significance: 8e-72; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 237 - 408
Target Start/End: Complemental strand, 41867548 - 41867380
Alignment:
Q  237 tgaaccattgttcgaacgactccgacccagaacactcgacaaggttgtcagacaggatcatctcttatcatcaaactcaattcttcgttaatcaattcaa 336  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||   ||||||||||||||||||||||||||||||||||||||    
T  41867548 tgaaccattgttcgaacgactccgacccagaacactcgacaaggttgtcagacaagatc---tcttatcatcaaactcaattcttcgttaatcaattcaa 41867452  T
Q  337 cacaaacgtttaccttcaatcctctagtggggtccactgggtacaagtaaaaccaccattgcaaaagccatt 408  Q
    | ||||||| ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  41867451 cgcaaacgtctaccttcaatcctttagtggggtccaccgggtacaagtaaaaccaccattgcaaaagccatt 41867380  T

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Target: chr8; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 85 - 151
Target Start/End: Complemental strand, 41867713 - 41867647
Alignment:
Q  85 acccaaactcgattgtttcttccaaaccccacaacaacccattcaagcataacaacaagaccaaaca 151  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41867713 acccaaactcgatcgtttcttccaaaccccacaacaacccattcaagcataacaacaagaccaaaca 41867647  T

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Target: chr5 (Bit Score: 112; Significance: 3e-56; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 237 - 408
Target Start/End: Complemental strand, 43285607 - 43285436
Alignment:
Q  237 tgaaccattgttcgaacgactccgacccagaacactcgacaaggttgtcagacaggatcatctcttatcatcaaactcaattcttcgttaatcaattcaa 336  Q
    ||||||||||| |||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||| ||||||| ||||| |||| ||||||||||    
T  43285607 tgaaccattgtacgaacgactccgacccagaacactcgacgaggttgtcggacaagatcatctcttatcaacaaactccattctccgttcatcaattcaa 43285508  T
Q  337 cacaaacgtttaccttcaatcctctagtggggtccactgggtacaagtaaaaccaccattgcaaaagccatt 408  Q
    | ||||||| ||||||||||||| | |||||||||||  |||||| ||||||||||||||||||||||||||    
T  43285507 cgcaaacgtctaccttcaatccttttgtggggtccacctggtacaggtaaaaccaccattgcaaaagccatt 43285436  T

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Target: chr5; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 85 - 142
Target Start/End: Complemental strand, 43285775 - 43285718
Alignment:
Q  85 acccaaactcgattgtttcttccaaaccccacaacaacccattcaagcataacaacaa 142  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  43285775 acccaaactcgatcgtttcttccaaaccccacaacaacccattcaagcagaacaacaa 43285718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 1e-36; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 383 - 557
Target Start/End: Complemental strand, 4126562 - 4126388
Alignment:
Q  383 gtaaaaccaccattgcaaaagccatttacaataaaattggccgcaattttgaaggaaggagcttccttgcaaatataagggaagtttggatgcaaaatgt 482  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||| ||||||  ||||  |      
T  4126562 gtaaaaccaccattgcaaaagccatttacaataaaattggccggaattttgaaggtaggagctttcttgcaaatataagggaggtttgggagcaagtttc 4126463  T
Q  483 tggacaagtatctttacagcaacaacttctctccgatatttgcaaagaaacaacgaccaatatacaaaacattga 557  Q
    ||||||||| | ||||||  |||||||| | |  ||||||| ||||||||| || ||||| || ||||| |||||    
T  4126462 tggacaagtgtatttacaagaacaacttatgtatgatattttcaaagaaaccacaaccaagattcaaaatattga 4126388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 385 - 557
Target Start/End: Original strand, 4342821 - 4342993
Alignment:
Q  385 aaaaccaccattgcaaaagccatttacaataaaattggccgcaattttgaaggaaggagcttccttgcaaatataagggaagtttggatgcaaaatgttg 484  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||  |||||||| ||||||||||| ||||| ||||||  ||||  |   |    
T  4342821 aaaaccaccattgcaaaagccatttacaataaaattggtcgcaattttgaagccaggagctttcttgcaaatattagggaggtttgggagcaagtttcag 4342920  T
Q  485 gacaagtatctttacagcaacaacttctctccgatatttgcaaagaaacaacgaccaatatacaaaacattga 557  Q
    ||||||| | ||||||  |||||||| |    ||||||| |||||||||||| ||||| ||||||||||||||    
T  4342921 gacaagtgtatttacaagaacaacttatgcatgatattttcaaagaaacaactaccaagatacaaaacattga 4342993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 385 - 599
Target Start/End: Original strand, 25567882 - 25568094
Alignment:
Q  385 aaaaccaccattgcaaaagccatttacaataaaattggccgcaattttgaaggaaggagcttccttgcaaatataagggaagtttggatgcaaaatgttg 484  Q
    ||||||||||||||||||||||||||||||||||||||||  |||| |||| | ||||||||  | |||||||| || ||||| |||   ||||||||||    
T  25567882 aaaaccaccattgcaaaagccatttacaataaaattggcc--aattatgaatgtaggagctttttggcaaatattagagaagtctgggaacaaaatgttg 25567979  T
Q  485 gacaagtatctttacagcaacaacttctctccgatatttgcaaagaaacaacgaccaatatacaaaacattgatgcaggaaaaaatacattaatggatag 584  Q
    | || || || |||||  ||||  ||||||  ||| ||||||||||||| |||||||| || ||||| ||||| | ||||||||||| ||||| ||||||    
T  25567980 gtcaggtgtcgttacaagaacagattctctttgatgtttgcaaagaaacgacgaccaagattcaaaatattgaggaaggaaaaaataaattaaaggatag 25568079  T
Q  585 actctgccataaaaa 599  Q
    |||| |||| |||||    
T  25568080 actcagccaaaaaaa 25568094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 385 - 557
Target Start/End: Original strand, 4330368 - 4330540
Alignment:
Q  385 aaaaccaccattgcaaaagccatttacaataaaattggccgcaattttgaaggaaggagcttccttgcaaatataagggaagtttggatgcaaaatgttg 484  Q
    |||| |||||||||||| |||||||| |||||||||||||||||||||||||| |||||||| ||||||||||| ||||| ||||||  ||||  |  |     
T  4330368 aaaatcaccattgcaaaggccatttataataaaattggccgcaattttgaaggtaggagctttcttgcaaatattagggaggtttgggagcaagtttcta 4330467  T
Q  485 gacaagtatctttacagcaacaacttctctccgatatttgcaaagaaacaacgaccaatatacaaaacattga 557  Q
    ||||||| | ||||||  |||||||| | |  ||||||| ||||||||  || ||||| ||||||||||||||    
T  4330468 gacaagtctatttacaagaacaacttatgtatgatattttcaaagaaatcacaaccaagatacaaaacattga 4330540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 385 - 471
Target Start/End: Original strand, 4358289 - 4358375
Alignment:
Q  385 aaaaccaccattgcaaaagccatttacaataaaattggccgcaattttgaaggaaggagcttccttgcaaatataagggaagtttgg 471  Q
    |||||||||||||||||| ||||||||||||||||||| |||||||||||||| |||||||| |||| |||||| ||||| ||||||    
T  4358289 aaaaccaccattgcaaaatccatttacaataaaattggtcgcaattttgaaggtaggagctttcttgaaaatattagggaggtttgg 4358375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 385 - 598
Target Start/End: Original strand, 4333431 - 4333644
Alignment:
Q  385 aaaaccaccattgcaaaagccatttacaataaaattggccgcaattttgaaggaaggagcttccttgcaaatataagggaagtttggatgcaaaatgttg 484  Q
    |||||||| ||||| || |||||||||||||||||||||||||| ||| |||| |||||||| ||||||||||| ||||| ||||||  | || ||  ||    
T  4333431 aaaaccacaattgcgaaggccatttacaataaaattggccgcaaatttcaaggtaggagctttcttgcaaatattagggaggtttgggagaaagattatg 4333530  T
Q  485 gacaagtatctttacagcaacaacttctctccgatatttgcaaagaaacaacgaccaatatacaaaacattgatgcaggaaaaaatacattaatggatag 584  Q
    | |||||   | ||||  |||||||| | |  ||||||| ||||||||| ||  |||| ||||||||||| || ||||||||| ||| ||||| ||| ||    
T  4333531 gtcaagtgaatctacaagaacaacttatgtatgatattttcaaagaaaccacatccaagatacaaaacatagaagcaggaaaatatatattaaaggacag 4333630  T
Q  585 actctgccataaaa 598  Q
    ||| || |||||||    
T  4333631 actatgtcataaaa 4333644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 389 - 464
Target Start/End: Original strand, 4351114 - 4351189
Alignment:
Q  389 ccaccattgcaaaagccatttacaataaaattggccgcaattttgaaggaaggagcttccttgcaaatataaggga 464  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||| |||||    
T  4351114 ccaccgttgcaaaagccatttacaataaaattggccgcaattttgaaggtaggagttttcttgcaaatattaggga 4351189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 385 - 471
Target Start/End: Complemental strand, 4323225 - 4323139
Alignment:
Q  385 aaaaccaccattgcaaaagccatttacaataaaattggccgcaattttgaaggaaggagcttccttgcaaatataagggaagtttgg 471  Q
    ||||||||| ||||||| |||||||||||||||||||| |||||||||||||| ||||||||  |||||||||| ||||| ||||||    
T  4323225 aaaaccaccgttgcaaaggccatttacaataaaattggtcgcaattttgaaggtaggagctttattgcaaatattagggaggtttgg 4323139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 383 - 471
Target Start/End: Original strand, 6750702 - 6750790
Alignment:
Q  383 gtaaaaccaccattgcaaaagccatttacaataaaattggccgcaattttgaaggaaggagcttccttgcaaatataagggaagtttgg 471  Q
    ||||||| |||||||| ||||||||||||||| |||||||  |||| ||||| |||||||||||||||    ||||||||||| |||||    
T  6750702 gtaaaacaaccattgccaaagccatttacaatgaaattgggagcaaatttgagggaaggagcttccttatggatataagggaattttgg 6750790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 375 - 450
Target Start/End: Original strand, 6834021 - 6834096
Alignment:
Q  375 gggtacaagtaaaaccaccattgcaaaagccatttacaataaaattggccgcaattttgaaggaaggagcttcctt 450  Q
    ||||||| ||||||| |||||||| ||||||||||| ||| |||||||  |||| ||||| |||| ||||||||||    
T  6834021 gggtacaggtaaaacaaccattgccaaagccatttataatcaaattgggagcaaatttgagggaatgagcttcctt 6834096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 385 - 471
Target Start/End: Complemental strand, 6535762 - 6535676
Alignment:
Q  385 aaaaccaccattgcaaaagccatttacaataaaattggccgcaattttgaaggaaggagcttccttgcaaatataagggaagtttgg 471  Q
    ||||| |||||||| ||||||||||| ||| |||||||  |||| ||||| |||| ||||||||||   |||||||||||| |||||    
T  6535762 aaaacaaccattgccaaagccatttataatgaaattggtagcaagtttgatggaaagagcttccttctgaatataagggaattttgg 6535676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 393 - 471
Target Start/End: Original strand, 6672520 - 6672598
Alignment:
Q  393 cattgcaaaagccatttacaataaaattggccgcaattttgaaggaaggagcttccttgcaaatataagggaagtttgg 471  Q
    |||||| ||||||||||||||| |||||||  |||| ||||| |||||||||||||||   | |||||||||| |||||    
T  6672520 cattgccaaagccatttacaatcaaattgggagcaaatttgagggaaggagcttccttctgattataagggaattttgg 6672598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 383 - 450
Target Start/End: Original strand, 6756320 - 6756387
Alignment:
Q  383 gtaaaaccaccattgcaaaagccatttacaataaaattggccgcaattttgaaggaaggagcttcctt 450  Q
    ||||||| |||||||| ||||||||||| ||| |||||||  | || ||||| |||||||||||||||    
T  6756320 gtaaaacaaccattgccaaagccatttataatgaaattggaagaaaatttgagggaaggagcttcctt 6756387  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 383 - 471
Target Start/End: Original strand, 6725785 - 6725873
Alignment:
Q  383 gtaaaaccaccattgcaaaagccatttacaataaaattggccgcaattttgaaggaaggagcttccttgcaaatataagggaagtttgg 471  Q
    ||||||| ||| |||| ||||||||||| ||| |||||||  |||| ||||| |||||||||||  ||  |||||| |||||| |||||    
T  6725785 gtaaaacaacccttgccaaagccatttataatcaaattggtagcaaatttgagggaaggagctttgttctaaatatcagggaattttgg 6725873  T

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Target: chr2 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 385 - 477
Target Start/End: Complemental strand, 22586438 - 22586346
Alignment:
Q  385 aaaaccaccattgcaaaagccatttacaataaaattggccgcaattttgaaggaaggagcttccttgcaaatataagggaagtttggatgcaa 477  Q
    ||||| ||||||||||||||  |||||||||| ||||||||| | |||||||| |||||||||||||||||||| ||||||||||||| ||||    
T  22586438 aaaacaaccattgcaaaagctgtttacaataagattggccgcgagtttgaaggtaggagcttccttgcaaatattagggaagtttggaagcaa 22586346  T

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