View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20958_low_3 (Length: 378)
Name: NF20958_low_3
Description: NF20958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20958_low_3 |
 | |
|
| [»] chr4 (4 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 16 - 378
Target Start/End: Original strand, 42763890 - 42764252
Alignment:
| Q |
16 |
atcaagttaaagttggctgcctaaaattcataatttatgtgttgattcttgttgtttaatttggtcatgaaatcaaaatcatgatcgtctaatgcattaa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42763890 |
atcaagttaaagttggctgcctaaaattcataatttatgtgttgattcatgttgtttaatttggtcatgaaatcaaaatcatgatcgtctaatgcattaa |
42763989 |
T |
|
| Q |
116 |
gtgcaattgataattgatagggtttgatatactagacaaacaaattaacttcattcatctattattaccggtgtctaaatttccgataataatgtctttg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42763990 |
gtgcaattgataattgatagggtttgatatactagacaaacaaattaacttcattcatctattattaccggtgtctaaatttccgataataatgtctttg |
42764089 |
T |
|
| Q |
216 |
ccaagtgatttcttccacaatgaatcctttgcaaattcaccacctctctctaaaccaaggaaaccccatgaccgagttgtgtgtagttcatattttttgt |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42764090 |
ccaagtgatttcttccacaatgaatcctttgaaaattcaccacctctctctaaaccaaggaaaccccatgaccgagttgtgtgtagttcatattttttgt |
42764189 |
T |
|
| Q |
316 |
ttaagaaaactgatactacattcggatgttctgcatttaccaaaaatatagcaccaattagaa |
378 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
42764190 |
ttaagaaaactgatactacatttggatgctctgcatttaccaaaaatatagcaccaattagaa |
42764252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 178 - 376
Target Start/End: Original strand, 42744853 - 42745051
Alignment:
| Q |
178 |
tattaccggtgtctaaatttccgataataatgtctttgccaagtgatttcttccacaatgaatcctttgcaaattcaccacctctctctaaaccaaggaa |
277 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||||| || | |||| ||||||||||||||||||||| |||| |||||||||||||||| ||||| || |
|
|
| T |
42744853 |
tattaccggagtctaaatttccaataataatgtcttcacccaatgatctcttccacaatgaatcctttggaaatccaccacctctctctaacccaagaaa |
42744952 |
T |
|
| Q |
278 |
accccatgaccgagttgtgtgtagttcatattttttgtttaagaaaactgatactacattcggatgttctgcatttaccaaaaatatagcaccaattag |
376 |
Q |
| |
|
| |||| ||||| ||||||| |||||||||||||| ||||| |||| ||||||||||||||||| |||||||| ||||| |||||| || ||||||| |
|
|
| T |
42744953 |
atcccacgaccgggttgtgtatagttcatatttttcatttaaaaaaatcgatactacattcggatgctctgcattcaccaataatataacatcaattag |
42745051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 178 - 376
Target Start/End: Original strand, 42754212 - 42754410
Alignment:
| Q |
178 |
tattaccggtgtctaaatttccgataataatgtctttgccaagtgatttcttccacaatgaatcctttgcaaattcaccacctctctctaaaccaaggaa |
277 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||||| || | |||| ||||||||||||||||||||| |||| |||||||||||||||| ||||| || |
|
|
| T |
42754212 |
tattaccggagtctaaatttccaataataatgtcttcacccaatgatctcttccacaatgaatcctttggaaatccaccacctctctctaacccaagaaa |
42754311 |
T |
|
| Q |
278 |
accccatgaccgagttgtgtgtagttcatattttttgtttaagaaaactgatactacattcggatgttctgcatttaccaaaaatatagcaccaattag |
376 |
Q |
| |
|
| |||| ||||| ||||||| |||||||||||||| ||||| |||| ||||||||||||||||| |||||||| ||||| |||||| || ||||||| |
|
|
| T |
42754312 |
atcccacgaccgggttgtgtatagttcatatttttcatttaaaaaaatcgatactacattcggatgctctgcattcaccaataatataacatcaattag |
42754410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 172 - 349
Target Start/End: Complemental strand, 42733322 - 42733145
Alignment:
| Q |
172 |
atctattattaccggtgtctaaatttccgataataatgtctttgccaagtgatttcttccacaatgaatcctttgcaaattcaccacctctctctaaacc |
271 |
Q |
| |
|
|||| |||||||| | |||||||||||| ||||| ||||||| || | |||| ||||||||| |||| | || || |||||| ||||||||||| || |
|
|
| T |
42733322 |
atcttttattacccgagtctaaatttccaataatgatgtcttcacccaatgatctcttccacagtgaaccattatgaatttcaccgcctctctctaaccc |
42733223 |
T |
|
| Q |
272 |
aaggaaaccccatgaccgagttgtgtgtagttcatattttttgtttaagaaaactgatactacattcggatgttctgc |
349 |
Q |
| |
|
||||||| ||||||| |||||||||| || |||||||||||| |||||||||| |||||||||| ||||||||||||| |
|
|
| T |
42733222 |
aaggaaatcccatgatcgagttgtgtctaattcatattttttatttaagaaaattgatactacactcggatgttctgc |
42733145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University