View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20958_low_5 (Length: 257)
Name: NF20958_low_5
Description: NF20958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20958_low_5 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 21 - 257
Target Start/End: Complemental strand, 44260813 - 44260580
Alignment:
| Q |
21 |
aaaatacaaacaagaagctagtttcaaaccatcaaaacttgcaccaccctcttctttttgagattaaaaagaaagatctttccaaacaaactcatcaggt |
120 |
Q |
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| T |
44260813 |
aaaatacaaacaagaagctagtttcaaaccatcaaaacttgcaccaccctcttctttttgagattaaaaagaaagatctttccaaacaaactcatcaggt |
44260714 |
T |
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| Q |
121 |
tgacaatcccagcacaaaacaccatcatccagttgatttatcaagtcattaagatcaacatgttgactaagttggtttgatgatgaattaggaggcaaat |
220 |
Q |
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| T |
44260713 |
tgacaatcccagcacaaaacaccatcatctagttgat---tccagtcattaagattaacatgttgactaagttggtttgatgatgaattaggaggcaaat |
44260617 |
T |
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| Q |
221 |
caccaagacttgtgaaatccaccatctcacttgtata |
257 |
Q |
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| T |
44260616 |
caccaagacttgtgaaatccacaatctcacttgtata |
44260580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 56 - 251
Target Start/End: Complemental strand, 15978473 - 15978278
Alignment:
| Q |
56 |
aacttgcaccaccctcttctttttgagattaaaaagaaagatctttccaaacaaactcatcaggttgacaatcccagcacaaaacaccatcatccagttg |
155 |
Q |
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| T |
15978473 |
aacttgcatcgcccttttcactttgagatgaaaaagaaagatctttccagaaaaactgatgaggctgactaacctgattcaaaacaccaccatctagttg |
15978374 |
T |
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| Q |
156 |
atttatcaagtcattaagatcaacatgttgactaagttggtttgatgatgaattaggaggcaaatcaccaagacttgtgaaatccaccatctcact |
251 |
Q |
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| T |
15978373 |
atttaaccaatcgtcagaatcatcaagttgactaagttgctttgtagatgaactaggatgcaaatcaccaagattagtgaaatcaatcatctcact |
15978278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 148
Target Start/End: Complemental strand, 15978617 - 15978546
Alignment:
| Q |
77 |
tttgagattaaaaagaaagatctttccaaacaaactcatcaggttgacaatcccagcacaaaacaccatcat |
148 |
Q |
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| T |
15978617 |
tttgagatgaaaaagaaagatctttccatgcaaactgatcaggttgattagcccagttcaaaacaccatcat |
15978546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 249
Target Start/End: Complemental strand, 15978268 - 15978208
Alignment:
| Q |
189 |
aagttggtttgatgatgaattaggaggcaaatcaccaagacttgtgaaatccaccatctca |
249 |
Q |
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| T |
15978268 |
aagttggtttgttgatgaattatgaggcaaatcaacatgattagtcaaatccaccatctca |
15978208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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