View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20958_low_6 (Length: 221)
Name: NF20958_low_6
Description: NF20958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20958_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 4 - 202
Target Start/End: Complemental strand, 1176286 - 1176088
Alignment:
| Q |
4 |
atgatacagtgtgggagaaaagaagatcgccggcgatgtgacatttctagatctgaacagcttgaaaacaggcggcggtggttatgaggaaaaagaggtg |
103 |
Q |
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| T |
1176286 |
atgatacagtgcgggagaaaagaagatcaccggcgatgtgacatttctggatctgaacagcttgaaaacaggcggcggtggttatgaggaagaagaggcg |
1176187 |
T |
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| Q |
104 |
gcagtgcggttgcaactttgaagagaagaggtggcgattctggtggtgttaaggtcggagaagggtgagaagatgacagagggttggaggcgcggagaa |
202 |
Q |
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| T |
1176186 |
gcggtgcggttgcaactttgaagagaagaggtggcgattctggtggtgttagggtcggagaaaggtgagaagatgacagagggttggaggcgcgaagaa |
1176088 |
T |
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Target: chr4 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 4 - 192
Target Start/End: Original strand, 55038774 - 55038962
Alignment:
| Q |
4 |
atgatacagtgtgggagaaaagaagatcgccggcgatgtgacatttctagatctgaacagcttgaaaacaggcggcggtggttatgaggaaaaagaggtg |
103 |
Q |
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| T |
55038774 |
atgatacagtgcgggagaaaagaagatcgccggcgatgtgacatttctggatctgaacagcttgaaaacaggcggcggtggttatgaggaagaagaggcg |
55038873 |
T |
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| Q |
104 |
gcagtgcggttgcaactttgaagagaagaggtggcgattctggtggtgttaaggtcggagaagggtgagaagatgacagagggttggag |
192 |
Q |
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| T |
55038874 |
gcggtgtggttgcaactttgaagagaagaggtggcgattctggtggtgttagggtcggagaagggtgagaagatgacagagggttggag |
55038962 |
T |
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Target: chr1 (Bit Score: 154; Significance: 7e-82; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 5 - 202
Target Start/End: Complemental strand, 5197260 - 5197063
Alignment:
| Q |
5 |
tgatacagtgtgggagaaaagaagatcgccggcgatgtgacatttctagatctgaacagcttgaaaacaggcggcggtggttatgaggaaaaagaggtgg |
104 |
Q |
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| T |
5197260 |
tgatacagtgcgggagaaaagaagatcaccggcgatgtgacatttctggatctgaacagcttgaaaacaggcggcggtggttatgaggaagaagaggcgg |
5197161 |
T |
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| Q |
105 |
cagtgcggttgcaactttgaagagaagaggtggcgattctggtggtgttaaggtcggagaagggtgagaagatgacagagggttggaggcgcggagaa |
202 |
Q |
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| T |
5197160 |
cggtgtggttgcaactttgaagagaagaggtggcgattctagtggtgttagggtcggagaaaggtgagaagatgacagagggttggaggcgcgaagaa |
5197063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 139; Significance: 7e-73; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 4 - 202
Target Start/End: Complemental strand, 8004461 - 8004264
Alignment:
| Q |
4 |
atgatacagtgtgggagaaaagaagatcgccggcgatgtgacatttctagatctgaacagcttgaaaacaggcggcggtggttatgaggaaaaagaggtg |
103 |
Q |
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|||||||| || |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||| | |
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| T |
8004461 |
atgatacaatgcaggagaaaagaagatcgccggcgatgtgacatttccggatctgaacagcttgaaaacaggcggcagtggttatgaggaagaagaggcg |
8004362 |
T |
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| Q |
104 |
gcagtgcggttgcaactttgaagagaagaggtggcgattctggtggtgttaaggtcggagaagggtgagaagatgacagagggttggaggcgcggagaa |
202 |
Q |
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|| ||| ||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||| |
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| T |
8004361 |
gcggtgtggttgcaac-ttgaagagaagaggtggcgattctggtggtgttagggttggagaagggtgagaagatgacagagggttggaagcgcggagaa |
8004264 |
T |
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