View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20959_high_1 (Length: 473)
Name: NF20959_high_1
Description: NF20959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20959_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 390; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 12 - 454
Target Start/End: Complemental strand, 1530284 - 1529843
Alignment:
| Q |
12 |
catcatcatggggtagtagaatgagggccaaaaacaatataaccaaagatgatcataataactagtttcctttccatatgattattttgttaatgtattg |
111 |
Q |
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| T |
1530284 |
catcatcatggggtagtagaatgagggccaaaaacaatataaccaaagatgatcatactaactagtttcctttccatatgattattttgttaatgtattg |
1530185 |
T |
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| Q |
112 |
tttcatataattaacattacattcattcatctattgatccaaaaattattctttcatttatctaggtgcaactccttcaaaatatatggtggttttttat |
211 |
Q |
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| T |
1530184 |
tttcatataattaacattacattcattcatgtattgatccaaaaattattcttccatttatttacgtgcaactccttcaaaatatatggtggttttttat |
1530085 |
T |
|
| Q |
212 |
ttgtaagtgggcttccaaagtattataatcggattgctattannnnnnnngtgtaaattggtattttcggcgcactacggtagagattgatctattgaag |
311 |
Q |
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| T |
1530084 |
ttgtaagtgggcttccaaagtattataatcggattgctatta-tttttttgtgtaaattggtattttcggcgcactacggtagagattgatctattgaag |
1529986 |
T |
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| Q |
312 |
tggatggaaattggaatcataatttatggcaaaaatctcactcaaaagtttcgagatgttggtacattcccatatgttactgtaccgcttcacaatggga |
411 |
Q |
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| T |
1529985 |
tggatggaaattggaatcataatttatggcaaaaatctcactcaaaagtttcgagatgttggtacattcccatatgttactgtaccgcttcacaatggga |
1529886 |
T |
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| Q |
412 |
gaatatattaaaccttaacggcatgtttggtgcgcatgataac |
454 |
Q |
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| T |
1529885 |
gaatatattaaaccttaacagcatgtttggtgcgcatgataac |
1529843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 12 - 170
Target Start/End: Complemental strand, 1516054 - 1515896
Alignment:
| Q |
12 |
catcatcatggggtagtagaatgagggccaaaaacaatataaccaaagatgatcataataactagtttcctttccatatgattattttgttaatgtattg |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
1516054 |
catcatcatggggtagtagaatgagggccaaaaacaatataaccaaagatgatcatactaactagtttcctttccatatgattattttgttaatgtattg |
1515955 |
T |
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| Q |
112 |
tttcatataattaacattacattcattcatctattgatccaaaaattattctttcattt |
170 |
Q |
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| T |
1515954 |
tttcatataattaacattacattcattcatgtattgatccaaaaattattctttcattt |
1515896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 16 - 168
Target Start/End: Original strand, 7978452 - 7978615
Alignment:
| Q |
16 |
atcatggggtagtagaatgagggccaaaaacaa---tataaccaaagatgatcataataactagt-----------ttcctttccatatgattattttgt |
101 |
Q |
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| T |
7978452 |
atcatggggtaggagaatgagggccaaaaacaatactatcaacaaagatgatcataataactagtttttttcaagcttcctttcactgtgattattttgt |
7978551 |
T |
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| Q |
102 |
taatgtattgtttcatataattaacattacattcattcatctattgatccaaaaattattctttcat |
168 |
Q |
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|||| |||||||||| ||||||| ||||||||||||| |||||||||||| | ||||||||||| |
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| T |
7978552 |
---tgtaatgtttcatatgattaacagtacattcattcatgtattgatccaaagaatattctttcat |
7978615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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