View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20959_high_12 (Length: 209)
Name: NF20959_high_12
Description: NF20959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20959_high_12 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 13 - 196
Target Start/End: Complemental strand, 4785796 - 4785613
Alignment:
| Q |
13 |
agaacctgtgaggctctgcaaaaacccttttttgccgtataagcataatcataatccgatgcaagtcctccatttcttataacccaattgaatgcattgt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4785796 |
agaacctgtgaggctctgcaaaaacccttttttgccgtataagcataatcataatccgatgcaagtcctccatttcttataacccaattgaatgcattgt |
4785697 |
T |
|
| Q |
113 |
tcacaaatccagtgttgcatgctgcagggttgcaatccaaaagttcttgcgctgaaagactaataagcttccctgttgttattg |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
4785696 |
tcacaaatccagtgttgcatgctgcagggttgcaatccaaaagttcttgcgctgaaagactaataagcttccctgtttttattg |
4785613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 16 - 196
Target Start/End: Complemental strand, 4781901 - 4781715
Alignment:
| Q |
16 |
acctgtgaggctctgcaaaaacccttttttgccgtataagcataatcataatccgatgcaagtcctccatttcttataacccaattgaatgcattgttca |
115 |
Q |
| |
|
|||||||||||| |||||| |||||| | ||||||||| | |||||||| |||| |||||| |||| |||||||||||||||| ||||| ||||| | |
|
|
| T |
4781901 |
acctgtgaggctttgcaaacacccttctctgccgtatatggataatcattatccaatgcaactcctttgtttcttataacccaatcaaatgctttgttga |
4781802 |
T |
|
| Q |
116 |
caaatccagtgttgcatgc------tgcagggttgcaatccaaaagttcttgcgctgaaagactaataagcttccctgttgttattg |
196 |
Q |
| |
|
| ||||| | ||||| | | ||||| ||||||||||| |||||| ||||||| | |||||||||||||||||||||| |
|
|
| T |
4781801 |
cccatccactattgcaacccccacttatagggtcacaatccaaaagctcttgctctgaaaggttgataagcttccctgttgttattg |
4781715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University