View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20959_high_5 (Length: 301)
Name: NF20959_high_5
Description: NF20959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20959_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 182; Significance: 2e-98; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 11 - 208
Target Start/End: Original strand, 39187606 - 39187803
Alignment:
| Q |
11 |
cagagagacaaacaaaataaaccatgctctgacttcaacttgacatcatatgcacggtccagaacttgacaacgtattgcatagaagcgagaatgtacta |
110 |
Q |
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| T |
39187606 |
cagagagacaaacaaaataaaccatgctctgacttcaacttgacatcatatgcacggtccagaacttgacaatgtattgcatagaagcgagaatgtacta |
39187705 |
T |
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| Q |
111 |
catcatatgcatcgccttaatatccttacgcctgtgtataaattaaaagtaaattcattttacaacaagaagcaactgcttgttcatgtaaaactcgg |
208 |
Q |
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| T |
39187706 |
catcatatgcatcgccttaatatccatacgcctgtgtatagattaaaagtaaattcattttacaacaagaagcaactccttgttcatgtaaaactcgg |
39187803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 237 - 282
Target Start/End: Original strand, 39187829 - 39187874
Alignment:
| Q |
237 |
gtaaacaagagaattgattttctataagatgagatacagcagccat |
282 |
Q |
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| T |
39187829 |
gtaaacaagagaattgattttctataagatgagatacagcagccat |
39187874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 282
Target Start/End: Original strand, 2889044 - 2889088
Alignment:
| Q |
238 |
taaacaagagaattgattttctataagatgagatacagcagccat |
282 |
Q |
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| T |
2889044 |
taaacaagagatgtgattttctataagatgggagacagcagccat |
2889088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 282
Target Start/End: Complemental strand, 3145818 - 3145774
Alignment:
| Q |
238 |
taaacaagagaattgattttctataagatgagatacagcagccat |
282 |
Q |
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| T |
3145818 |
taaacaagagatgtgattttctataagatgggagacagcagccat |
3145774 |
T |
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