View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20959_high_6 (Length: 267)
Name: NF20959_high_6
Description: NF20959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20959_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 176; Significance: 7e-95; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 16 - 251
Target Start/End: Complemental strand, 39791968 - 39791718
Alignment:
| Q |
16 |
atgtttgaactatatgttaagggaaatgcctcttctcaagtaaatatgaagtgaatgggattataagttggaaccaaattagaa---caaaggtagcacc |
112 |
Q |
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| T |
39791968 |
atgtttgaactatatgttaagggaaatgcctcttctcaagtaaatatgaagtgaatgggattacaagttggaaccaaattagaagaacaaaggtagcacc |
39791869 |
T |
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| Q |
113 |
accacgttaattaagggtctcgataccaagt------------taattaactcacaactctcacttacatgcatacttttcaaactggaagtaaatttcg |
200 |
Q |
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| T |
39791868 |
accacattaattaagggtctcgttatcaagtataatcgcatattaattaactcacaactctcacttacatgcatacttttcaaactggaagtaaatttca |
39791769 |
T |
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| Q |
201 |
tttaaaattgtatgattggggaccaccaaataaacatgacagaaagaagct |
251 |
Q |
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| T |
39791768 |
tttaaaattgtatgattggggaccaccaaataaacatgacagaaagaagct |
39791718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 171 - 223
Target Start/End: Complemental strand, 39780667 - 39780615
Alignment:
| Q |
171 |
gcatacttttcaaactggaagtaaatttcgtttaaaattgtatgattggggac |
223 |
Q |
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| T |
39780667 |
gcatactttacaaactggaagtaaatttcgtttaaaattgtatgattggggac |
39780615 |
T |
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